RNA id: TU185388


Basic Information

Item Value
RNA id TU185388
length 1081
lncRNA type sense_over
GC content 0.32
exon number 1
gene id trpc6b
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 11330221 ~ 11345797 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGAAGTTGCTGACTTTGTAAATCTATCATATTTTATCATAATATGATTGTTGTTTAAGAGCCATGGTTTactacaaatgttttattaaccctatttattgattcataatttattgtgtGAAGTCTGAAAGTTAAAAGATGTCAGTCTTTCTGCATAAACAATggtttatttctaataatatatatatatatattgtgctttCATCTTGTTTGTCTTGTATGCACTAAACCCTAATAAGTTCACTACACTCATTTACTGTAACGAATTCTTGTAATCCCTCATTTTGGTCATCAAAATTCAGACACCAGAGGTTATTTTCGTTTCACTATTTGTAGAACCACACAGAGGTGCTGTTGCGTTGGTTGAACCCACGGGGACCGGagtcacctttatttttgttttgtattattattccCCCACAAAACTACTTAAAAGCACCATTTTAGCCGGCAGCatacaaaagcattgaaatgttTACAATAAGTATCCATTTGTTTAATAcacaacatttttgaaaaggcTCTTGACCCAAGAACATAGCTATACCTGTTCAAATCTTCCTTTGGTTTGACTTTGCTTGAATATATCAGTGTGGTTTTATAGTGTTCACCATTTACAAGCAGCCATTAAAAATATGCCATTTTCTCCAAacatgtattattcattttcagGTGATGTATAATTGAGGGAATGTGCGATTAAATCctttaaagtgaaaacaaaacaaaaaacttaagACATTCTTTcaacacaaactaaaatattttagaggaAAACTGAGCTTTCTGAtgctgcatagacagcaatgcaagtTAAAAATGGTCCCTGGCCCAAAGACATATTAAAGacactgttaaaataatcaATGCAACATCAGTGGTTCTACCATGATTTTATGAAActttaagaatatattttgcACGCAAAGAACTAAattaccaagcttgaaagagccatgatacatttttaaaaacttttgactgtgttcgtctgaaagaagaaagtcatatacacctaggatggcttcggggggAGTAAAATACAGGGTAATataaatttttgggtaaactttaCCTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006253135.1 lncRNA upstream 34085 11307547 ~ 11309510 (+) False LOC122362586
XR_006253134.1 lncRNA upstream 34085 11307658 ~ 11309510 (+) True LOC122362586
TU185379 lncRNA upstream 44335 11299003 ~ 11299260 (+) True G125540
TU185365 lncRNA upstream 106454 11234349 ~ 11237141 (+) True selenot1b
TU185293 lncRNA upstream 299529 10936365 ~ 11044066 (+) True G125480
TU185644 lncRNA downstream 558784 11903459 ~ 11903992 (+) True G125709
TU185651 lncRNA downstream 694270 12038945 ~ 12039444 (+) True G125714
TU185692 lncRNA downstream 1048836 12393511 ~ 12394732 (+) True G125750
TU185696 lncRNA downstream 1067190 12411865 ~ 12412245 (+) True G125753
TU185704 lncRNA downstream 1235050 12579725 ~ 12589944 (+) True G125760
XM_043264427.1 mRNA upstream 81525 11245321 ~ 11262070 (+) False baz1b
XM_043264430.1 mRNA upstream 81525 11245321 ~ 11262070 (+) False baz1b
XM_043264426.1 mRNA upstream 81525 11245322 ~ 11262070 (+) True baz1b
XM_043264428.1 mRNA upstream 81525 11245322 ~ 11262070 (+) False baz1b
XM_043264431.1 mRNA upstream 98903 11240627 ~ 11244692 (+) True bcl7bb
XM_043264377.1 mRNA downstream 7137 11351812 ~ 11360805 (+) True pgr
XM_043264378.1 mRNA downstream 7137 11351812 ~ 11360805 (+) False pgr
XM_043216739.1 mRNA downstream 553584 11898259 ~ 11901956 (+) False LOC122323085
XM_043216740.1 mRNA downstream 553586 11898261 ~ 11901956 (+) True LOC122323085
XM_043264728.1 mRNA downstream 844789 12189464 ~ 12379252 (+) False nectin1b
XR_006246968.1 other upstream 106448 11234331 ~ 11237147 (+) False selenot1b
TU185364 other upstream 106454 11234349 ~ 11237141 (+) False selenot1b
XR_006253172.1 other upstream 111881 11226115 ~ 11231714 (+) False ccnl1a
TU185314 other upstream 373828 10968085 ~ 10969767 (+) True G125496
TU185257 other upstream 506319 10824974 ~ 10837276 (+) False G125461
TU185801 other downstream 1464775 12809450 ~ 12822781 (+) True G125830
TU185810 other downstream 1535913 12880588 ~ 12884612 (+) True G125836
XR_006246942.1 other downstream 1572551 12917226 ~ 12925468 (+) False napab
XR_006246961.1 other downstream 1602166 12946841 ~ 12955945 (+) False glb1l2
XR_006253128.1 other downstream 1871809 13216484 ~ 13218337 (+) False LOC122362547

Expression Profile