RNA id: TU185801



Basic Information


Item Value
RNA id TU185801
length 928
RNA type TUCP
GC content 0.48
exon number 4
gene id G125830
representative True

Chromosome Information


Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 12809450 ~ 12822781 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ttttttttttctctctttatggAATTTCTATTATTTCTAGACCCCAACTGTTGCGCTATATAGGATGCACAGACAATGTCAAACATAAAAtgcacttgtgttttttttttacattatttctgaaACTAAAAGTCAATAATTGTAAACCTCTACAGTGAACGTTAACTGTGGCAGTGAGGAAATAAATGAAGGAAACCGTATGATACTGACCTTCcacttcctgcagagttttgtcAACATCCTGGCTCTCAGGGATGGCAGCTTTGTCTTTTTTCATGTCCTTTTCCTCACTGTCTCGGTCATCGTCTTCATCCTCATACACATAGTGGTAGTCCTCCTCGTCTCCGTcgtcctcctgctcctcctcctcctcctcctcctcctcctcctcttcagctGTGTCCTCTGGAGTGGGTGGCTCATTGGCAACAGGATTACCTCTCCTCTACCACctcatcctcttcatcatcctcatcctcgaCGACAGGCTCCTCCACctcctcatcttcttcttcatcctcatcatcaaGCTCTTTAGAGGGTGAAGCAGGAGGTGCGGGCTCCTCAGGACGAGTAGACGGGCAGCAGACGTATTCAGTGCCGTGGAATTTATCGATGCCACAGGGCAGCAGCATGCCATAGCTGTGCAGGACCATGTCCCCCTTAGAGCAGGCCTTTTGGCCACGCCATGCCACTGCTGATGACTCACGCACATGTCCATACGCTCCTTATGGAAGAATTTACACTTCTCTGGCACCAGTAGGACGTCGCTCACAAATTCCCCAACTGAAAAACATACCAAGCACTTGTAAGGGACCACAATGTGAGCATGGCCCTTGCACTGTTTCTTGTCCTTCTTGCACCAGTTCTCGATCTTGACTGGCTGGTTGGCTTCCACCACATTTGTGATTTGCAGATCAGGATACAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU185741 lncRNA upstream 168014 12641192 ~ 12641436 (+) True G125784
TU185740 lncRNA upstream 173067 12636156 ~ 12636383 (+) True G125783
TU185704 lncRNA upstream 219506 12579725 ~ 12589944 (+) True G125760
TU185696 lncRNA upstream 397205 12411865 ~ 12412245 (+) True G125753
TU185692 lncRNA upstream 414718 12393511 ~ 12394732 (+) True G125750
TU185840 lncRNA downstream 187093 13009874 ~ 13012900 (+) True G125855
TU185872 lncRNA downstream 393733 13216514 ~ 13218281 (+) False LOC122362547
TU185885 lncRNA downstream 514973 13337754 ~ 13339066 (+) True G125877
TU185887 lncRNA downstream 523897 13346678 ~ 13346937 (+) True G125879
TU185889 lncRNA downstream 527710 13350491 ~ 13351730 (+) True G125881
XM_043264215.1 mRNA upstream 214061 12592067 ~ 12595389 (+) True LOC122362670
XM_043264728.1 mRNA upstream 430198 12189464 ~ 12379252 (+) False nectin1b
XM_043264732.1 mRNA upstream 430198 12189466 ~ 12379252 (+) False nectin1b
XM_043264731.1 mRNA upstream 433040 12189466 ~ 12376410 (+) False nectin1b
XM_043264733.1 mRNA upstream 433041 12189468 ~ 12376409 (+) False nectin1b
XM_043216591.1 mRNA downstream 31379 12854160 ~ 12867723 (+) False st14a
XM_043216589.1 mRNA downstream 31380 12854161 ~ 12867723 (+) False st14a
XM_043216587.1 mRNA downstream 31408 12854189 ~ 12867723 (+) True st14a
XM_043216590.1 mRNA downstream 31408 12854189 ~ 12867723 (+) False st14a
XM_043265099.1 mRNA downstream 45260 12868041 ~ 12875690 (+) True dhx34
XR_006246968.1 other upstream 1572303 11234331 ~ 11237147 (+) False selenot1b
TU185364 other upstream 1572309 11234349 ~ 11237141 (+) False selenot1b
XR_006253172.1 other upstream 1577736 11226115 ~ 11231714 (+) False ccnl1a
TU185314 other upstream 1839683 10968085 ~ 10969767 (+) True G125496
TU185257 other upstream 1972174 10824974 ~ 10837276 (+) False G125461
TU185810 other downstream 57807 12880588 ~ 12884612 (+) True G125836
XR_006246942.1 other downstream 94445 12917226 ~ 12925468 (+) False napab
XR_006246961.1 other downstream 124060 12946841 ~ 12955945 (+) False glb1l2
XR_006253128.1 other downstream 393703 13216484 ~ 13218337 (+) False LOC122362547
XR_006253129.1 other downstream 393876 13216657 ~ 13218346 (+) False LOC122362547

Expression Profile