RNA id: XM_043264058.1


Basic Information

Item Value
RNA id XM_043264058.1
length 3405
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC122362547
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 13216484 ~ 13222148 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGACGTCACATTCCCGCGACACGTTAGTAACGCGACAGCTGCATTTTTTTGGACGAGTTTCGAAGTTGTAAACCCGATTAAAGTGGAGTTTTGTTGCAATTCCCAGCGTCGTGTTAGACAGCACATCTCGGCGCCGACTGTAACGGCACAACACCTGAAACATGTCAGACGTCGTTTTGAAAACGGAggttaaagaggagagtgaagacgCGGGGTACGAAGAAGCGCACAGAACCAAGACTGTAGATGCAAAAGTGTTCAGAGATAAAGAAACAAATCTTATGGAAATCAAAGAGGAAAGTGAAGAGCTGAACGAAGTGGAGGAGAAGCGTCAGAATCCTAATCACTTCACAACTGGAGTAAATGGtttgaaaattgaaaagaaTTTCTCAGAAACAAAGACAGAAGCCATAAAATCTTTCACCtgccctcagtgtggaaagCATTTCTCCTCTAAAGGAAACCTTAATGTGCACCTCAAAATCCACAcgggagagaagcctttcaccTGCTGTCAGTGTGGGAAGAATTTTGCCACTAAAGGAAATCTTAATGTACACATAAGAATCCACAcgggagagaagcctttcacctgccttcagtgtggaaagagtttcccGTTTAAAGGAAGGCTTAATACGCACGTAAGAattcacactggagaaaaaccttTCACCTGTCCTCATTGTGGAAGGAGTTACCAGTGTAAAACATACCTTAATAGGCACATGAAAATTCACGAAGCCCAGAACCCTTTCACCTGTCCTCAGTGTGGAAAAACATTCACGATGAAAGAAGGCTTGAAACGTCACACGAGAATTCACGCGGGAGCCAAATCTTTCACCTGTCCTCACTGCGGGAAGACTTTTACGCATAAGAGAAACCTTCAATCGCACGTAAAGATTCACGATGGAGATCGATCTCCGCTGTGCGTCGAGAAAGGCGATCGTTTCGGTACGCGCGACACGAAAGGAAATATCGAAAGGACACCTTTCGCTTGCCCTCAATGTGGCAGGAGTttcaaagacaaagaaaactataatgCCCACTTCAAAATTCACATCGGAGAAGAGCTTCTCGGATGCAACCGCTGTGGGAAGAGTTTCCCGTGTGAAGAGTATCTCAGCAGACACATGCAAGTCCACGGAGAACAGCCTTTCGCTTGCTCTCAGTGCGGAAGTTGTTTCGCAGACAGAAGAAGCCTTAAGAAACACGCGAGGACTCACGCTGGAGAAAAACCTTTCACGTGTTCTCAGTGCGGGAGGAGTTTTACGCGTAAAGAAGCTTTTAATGTGCACGAACGAGCTCATAACGGAGAAAAGCCTTTTAGATGCCttcagtgcggaaagagttaCCCGTATGACCGATGTCTTAAGAGGCACGTCAAAACTCACGCCAAGGAGAAGCCTTTCACCTGCTCTCTGTGTGGGAGAACATTCACGGAGAAAGGAAGCCTTAAGGTTCACATGacgatccacaccggagagaaacctttcGGGTGCTCGCAGTGTGGGAAGAGGTTTAGACGTAAAGGAGGACTTAATGagcacatgagaattcacaccggagagaagccgtacaCGTGCCTCCAGTGCGGAAAGGCTTTCGCCGTTAAAGGAGGATATAATTTGCACATGAGAACTCACACTGGAGAAAAGCCCTACGCCTGTCATctgtgtgggaagagtttcgtACTAAAAGCGATACTTCATATGCACGTGcgagttcacaccggagagaggcCTTTCGTGTGCGTTCACTGCGGGAAAAGATTCCGGCGGAAAGTTAACCTTAATCTGCACACCAGGCTTCACACTGGAGAGAGGCCTTTCGCGTGCCGGCACTGTGGGAATACTTTCACGTGGGCAAAAAGTCTCAAACAACACGTATCGCGCTTCTGTAAGGTTGTTCGGCGCCGATAAAGACGGTACACGCTTTTAATTGAGCAGCAGCCCACTTGAAAGTCCACGCAAATGAGAAGCCTGTTTTTAGggaaagtgctttaaaaagagAACAAGGCAAAACATCGATTCTAGTGCTCGTGTCTGCTCGGAGAGTAAGAAGACCTCAAGTAGCGGTGAAttcacccccaaaaaaatcCTTGCTGGAGAAAGAGTGCAAGTGTTCGTATCGTGGAAAGATTTTGCTTCAGTCAGGTTAAATGTAAACGCTCGCTAGAGAAGATGTACATCTTAATGGAAGAGGATTAGGGCcgagcaataaaaaaaattaaaccatgtTGAGATTACATTTTgagagaaaactaaataaaatatttagaataaactACATTAGGCTAAAAAACACCAACCTATCTGGATTCATGACGTAAACGTACCTAGGCACattttttagcgagacacgaaatgAGCCAATGAGTacatattttactgcattttccaaaagtaatgaacactagaggcagtaaaactcttttCAGACAAATTTAGATAAAGTGCAATTTTCGCGTACATACCTGATGTAAGAACACTGCAATACGTAACCCGTGTTTTAGCGCCATTTAGTGGACATTTCCTTTGAAAACTGCTGTGATATGTACTTACTGGTACACACAGTATTTCACATCTTGCTAAAATGTGCTCCAAGGTACGTTTGTACCACGAGATGACACCAGTGTGGAAAACGGGAGAAACACTCTGCaacaaaaatcagtttttatatatgtgtatatgtatgttttattgctTGGCCTATATCCCCTTCCGTTCAACTTCACAGTTTGCGATTTAAATGTTATGTCATTGATgtgaaagtaaaaagaaattCTAAAGGTGCCATCtgtgtttgaaaataatgaTGAAGATGCATACACAGCTTGTTGTGAAAATGCTATGTATACTTGATGGCTACACCACGGGTTACTTTTGAGGTCtgacacaaataaaacatggaaaatgtACGTACGTTTAATCATTAAAAGCTTTTTCGTAAATGACAGTGATTGTGCTGTCTATTAGACCTGTGCTCATCAAGTAAAGCTTTACGTTTGGAACAGCTTCACAAACAGGCTACGTATCTGTGTTGCGAACATTAAACGGTAGTATTGGGTTAAACGTTTATAGTCCTGACATGGAAAAATGAAGATACAGAGATTAAAGAGCTCGGTGTACGTTCTCAATTCTTCGGTAATGTTTCCTGatgattataaatattattaatgtagcAAAGTTTCAGAGAACTTTCCTATTCCttcaataaattcataatttgcctattgggtaggattagggatgtagattAAGATCATGTAGGATAAGCcattaatatgtttaattaatgcTAATAACTCGTTAAGagacacaaaataaagtgttaaagtggttttaaaaacattttagagaaaaatgttttggtattAAAAACAAGTTAATAACATTTTGTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185840 lncRNA upstream 203584 13009874 ~ 13012900 (+) True G125855
TU185741 lncRNA upstream 575048 12641192 ~ 12641436 (+) True G125784
TU185740 lncRNA upstream 580101 12636156 ~ 12636383 (+) True G125783
TU185704 lncRNA upstream 626540 12579725 ~ 12589944 (+) True G125760
TU185696 lncRNA upstream 804239 12411865 ~ 12412245 (+) True G125753
TU185885 lncRNA downstream 115609 13337754 ~ 13339066 (+) True G125877
TU185887 lncRNA downstream 124533 13346678 ~ 13346937 (+) True G125879
TU185889 lncRNA downstream 128346 13350491 ~ 13351730 (+) True G125881
TU185894 lncRNA downstream 145271 13367416 ~ 13369511 (+) True G125886
TU185895 lncRNA downstream 147568 13369713 ~ 13370781 (+) True G125887
XM_043264552.1 mRNA upstream 51290 13105272 ~ 13165194 (+) False large2
XM_043264195.1 mRNA downstream 51052 13273197 ~ 13299638 (+) True cngb1a
XM_043264609.1 mRNA downstream 80391 13302536 ~ 13337442 (+) False kifc3
XM_043264605.1 mRNA downstream 86530 13308675 ~ 13337442 (+) True kifc3
XM_043264606.1 mRNA downstream 86533 13308678 ~ 13337442 (+) False kifc3
XM_043264607.1 mRNA downstream 86536 13308681 ~ 13337442 (+) False kifc3
XR_006246961.1 other upstream 260539 12946841 ~ 12955945 (+) False glb1l2
XR_006246942.1 other upstream 291016 12917226 ~ 12925468 (+) False napab
TU185810 other upstream 331872 12880588 ~ 12884612 (+) True G125836
TU185801 other upstream 393703 12809450 ~ 12822781 (+) True G125830
TU185364 other upstream 1979343 11234349 ~ 11237141 (+) False selenot1b
TU185911 other downstream 204952 13427097 ~ 13430765 (+) False rpl35a
TU186277 other downstream 456900 13679045 ~ 13682571 (+) True G126132
TU186336 other downstream 687419 13909564 ~ 13912800 (+) True G126175
TU186297 other downstream 717950 13940095 ~ 13941369 (+) True G126146
TU186575 other downstream 1604736 14826881 ~ 14828292 (+) True gemin7

Expression Profile