RNA id: TU185911


Basic Information

Item Value
RNA id TU185911
length 469
RNA type TUCP
GC content 0.51
exon number 5
gene id rpl35a
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 13427044 ~ 13430765 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCAGCGTTCCCTGCGAGCGGCCTTTTCCTCCATTTTTGAGACAGAATCAGGTTTATTTGACCTGGTCAAAGCATCATCATGCCTGGAAGGCTGTGGAGCAAGGCCATCTTTGCTGGCTACAAGCGTGGCCTGAGGAACCAGCGTGAGCACACCGCTCTTCTCAAGCTCGAAGGAGTCTACAACAGAGACGAGGTCGACTTCTACCTGGGCAAACGCTGTGCCTACGTCTACAAGGCAAAGAAGAAGACTGCCACACCTGGCGGTAAACCCAACAAGACGCGTGTCATCTGGGGTAAAGTCACAAGGGCTCATGGAAACAGTGGAATGGTTCGTGCCAAGTTCAAGAGCAACCTTCCTGCGAAGGCTATGGGGCACAGGATCCGAGTGatgcTGTACCCATCTCGTGTGTAACCTGCTTTTGTGtacagacaataaaaaaaatttggtcCAAAACGTTGCCTCTGATCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185895 lncRNA upstream 56316 13369713 ~ 13370781 (+) True G125887
TU185894 lncRNA upstream 57586 13367416 ~ 13369511 (+) True G125886
TU185889 lncRNA upstream 75367 13350491 ~ 13351730 (+) True G125881
TU185887 lncRNA upstream 80160 13346678 ~ 13346937 (+) True G125879
TU185885 lncRNA upstream 88031 13337754 ~ 13339066 (+) True G125877
TU186228 lncRNA downstream 112488 13543253 ~ 13543775 (+) True G126098
XR_006246953.1 lncRNA downstream 181294 13612059 ~ 13692558 (+) False LOC122323141
XR_006246954.1 lncRNA downstream 201311 13632076 ~ 13693855 (+) False LOC122323141
XR_006246952.1 lncRNA downstream 201311 13632076 ~ 13692558 (+) True LOC122323141
XR_006246951.1 lncRNA downstream 201311 13632076 ~ 13692558 (+) False LOC122323141
XM_043264303.1 mRNA upstream 849 13423857 ~ 13426248 (+) True LOC122362741
XM_043264710.1 mRNA upstream 20804 13396211 ~ 13406293 (+) False depdc7a
XM_043264708.1 mRNA upstream 20804 13396212 ~ 13406293 (+) True depdc7a
XM_043264709.1 mRNA upstream 20804 13400296 ~ 13406293 (+) False depdc7a
XM_043264782.1 mRNA upstream 35418 13377206 ~ 13391679 (+) True qser1
XM_043264677.1 mRNA downstream 1130 13431895 ~ 13458567 (+) True abcc5
XM_043264678.1 mRNA downstream 1130 13431895 ~ 13458567 (+) False abcc5
XM_043264679.1 mRNA downstream 1513 13432278 ~ 13458567 (+) False abcc5
XM_043264676.1 mRNA downstream 1514 13432279 ~ 13458567 (+) False abcc5
XM_043264683.1 mRNA downstream 28205 13458970 ~ 13469321 (+) False rnpepl1
XR_006253129.1 other upstream 208751 13216657 ~ 13218346 (+) False LOC122362547
XR_006253128.1 other upstream 208760 13216484 ~ 13218337 (+) False LOC122362547
XR_006246961.1 other upstream 471152 12946841 ~ 12955945 (+) False glb1l2
XR_006246942.1 other upstream 501629 12917226 ~ 12925468 (+) False napab
TU185810 other upstream 542485 12880588 ~ 12884612 (+) True G125836
TU186277 other downstream 248280 13679045 ~ 13682571 (+) True G126132
TU186336 other downstream 478799 13909564 ~ 13912800 (+) True G126175
TU186297 other downstream 509330 13940095 ~ 13941369 (+) True G126146
TU186575 other downstream 1396116 14826881 ~ 14828292 (+) True gemin7
TU186588 other downstream 1476502 14907267 ~ 14908483 (+) False LOC122322993

Expression Profile