RNA id: TU187882


Basic Information

Item Value
RNA id TU187882
length 992
lncRNA type inter_gene
GC content 0.54
exon number 3
gene id G127239
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 17808601 ~ 17814422 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGACGAACGCACAAACGAACACGAAAACGACGCCGTCGAGCGGATAAGTGGACGTTAAACACGTAAAGAGAAACTGAGAGTGTCGTCCGTCGGTGGAGTCGCGTGGCGCCGCGGCTCTTTCTCTGTAACCTCGCGGACGGGCGTTTCGTCCGACGCTTCGCTCTCCTCGCCCCGCAGCGACGCCGAGCGGCTGCCGGCGCCCAGGGACAGGTTCGTCGCCTCGGTGTCGTCGTGAGAGTAGCGTCCCGAGTCGCCCGTCTCGTGGCTGCCCTCGCTGGAATGAGAGCCCTCGCTGTCGGCCCCCGGGGGCCCGAACAGGCCCTGCAGCGAGGACGGCGGGTGCTGAGGAGAGGTTTCTGTGTAACACAGCAAGGTCGTGCCGTGATGATAGGAGTAAGATGGACTGGAGACCCTCTTCACATCCTGATGGAGGAAGTAAACACcgGCCAGTATGAGGATGCAGATGATAATACAGGCTAAAGCGATGCTCACGCCCACCACTATCCCCGTCATTGACCTCTGATCCAGGTGATAGAAACCATCGGAAGACGCTGCAGACAGAGCAAAAAAACTTGAATTCTTGAACGTCTATGTGGATTATCACATCAATGCATTTAAACGCAATGCTTCTATCGATCTGAACATCCAGCTTAAAGAGGCTTCTGTTATTCACCCGTGCCGTGGGCGGAGACGTGTTTTCTGGGGGCGTGGCCATCTGTGTGCACGGTCAGTTCTACCGCCGAGGAGAACGGCCCGTCTCCCATCTGATTGGACGCCGAGACCTTCACCAGGTACACCTGACCAGACTGGAGATTCTCCAGCAGGGCCATCGTGACGCTCCCTGACAACGAGGGACAcgttattaaacaaaaattcaCTCGAAAACACTGTGGACCGACAGggaaaaaacactgtttaagctgttttgtaaaaaaaaaatgtctctatTCATTAATTGTGTAAATCAcagtaaagacaaaaaaataaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187867 lncRNA upstream 24971 17782598 ~ 17783703 (+) True G127228
TU187835 lncRNA upstream 57423 17750377 ~ 17751251 (+) True G127208
TU187834 lncRNA upstream 57492 17750352 ~ 17751182 (+) False G127208
TU187831 lncRNA upstream 58498 17749391 ~ 17750176 (+) True G127207
TU187819 lncRNA upstream 113081 17695334 ~ 17695593 (+) True G127195
TU187894 lncRNA downstream 6571 17818738 ~ 17851713 (+) True G127240
TU187896 lncRNA downstream 42483 17854650 ~ 17855811 (+) True G127242
TU187898 lncRNA downstream 44845 17857012 ~ 17858149 (+) True G127243
TU187874 lncRNA downstream 117301 17929468 ~ 17933819 (+) True G127233
TU187875 lncRNA downstream 117301 17929468 ~ 17933819 (+) False G127233
XM_043216686.1 mRNA upstream 31697 17769658 ~ 17776977 (+) True pigb
XM_043216687.1 mRNA upstream 31697 17769771 ~ 17776977 (+) False pigb
XM_043264911.1 mRNA upstream 115440 17555210 ~ 17693234 (+) True LOC122363047
XM_043264912.1 mRNA upstream 115440 17555211 ~ 17693234 (+) False LOC122363047
XM_043264179.1 mRNA upstream 308157 17498529 ~ 17500517 (+) True LOC122362636
XM_043264449.1 mRNA downstream 71451 17883618 ~ 17887207 (+) False sdr42e1
XM_043264448.1 mRNA downstream 71498 17883665 ~ 17887207 (+) False sdr42e1
XM_043264450.1 mRNA downstream 72194 17884361 ~ 17887207 (+) False sdr42e1
XM_043216610.1 mRNA downstream 75800 17887967 ~ 17917268 (+) True LOC122323000
XM_043264339.1 mRNA downstream 124863 17937030 ~ 17969461 (+) False LOC122362789
TU187698 other upstream 397081 17410866 ~ 17411593 (+) True G127098
TU187390 other upstream 499516 17303820 ~ 17309158 (+) False LOC122322904
TU187389 other upstream 502700 17303820 ~ 17305974 (+) False LOC122322904
TU187377 other upstream 643917 17129922 ~ 17164757 (+) False LOC122362575
XR_006253166.1 other downstream 71498 17883665 ~ 17887211 (+) True sdr42e1
TU187918 other downstream 110761 17922928 ~ 17928165 (+) True G127258
TU187919 other downstream 113933 17926100 ~ 17928165 (+) False G127258
TU187968 other downstream 326368 18138535 ~ 18140253 (+) True G127292
TU188207 other downstream 748199 18560366 ~ 18561610 (+) False G127456

Expression Profile