RNA id: TU188450


Basic Information

Item Value
RNA id TU188450
length 271
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G127617
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 19575889 ~ 19576159 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctttttcagcTACTCGTAGATCATCGTGGTGTTCGCTCGTATAAGAAGATCTGCTCGTTTTAGGGGACGGTGCGAAGATGCTGAAGATAGAACGGTTTAAAGTaggcatttatttttgatagtaACATATATTTGATATCTTGTAGAGATGCATCAAATCAAACCATGTCAAACTCATACTCAACAATCTTTCTGATCTTAATTAAATCTACGATATTAAAATTGCAGTGACCCATAAAATGGTCTATTTGAATTAAAAGCTAAAACTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006246958.1 lncRNA upstream 7404 19487570 ~ 19568485 (+) True LOC122323166
XR_006246957.1 lncRNA upstream 95668 19452530 ~ 19480221 (+) True LOC122323165
XR_006253152.1 lncRNA upstream 227410 19330322 ~ 19348479 (+) True LOC122362700
TU188406 lncRNA upstream 287343 19269663 ~ 19288546 (+) False LOC122323181
TU188269 lncRNA upstream 794185 18730690 ~ 18781704 (+) False G127500
TU188463 lncRNA downstream 46854 19623013 ~ 19623282 (+) True G127630
TU188465 lncRNA downstream 49994 19626153 ~ 19626521 (+) True G127632
TU188470 lncRNA downstream 205606 19781765 ~ 19924802 (+) True G127637
TU188509 lncRNA downstream 409582 19985741 ~ 19991636 (+) True G127663
TU188679 lncRNA downstream 626589 20202748 ~ 20211417 (+) True G127766
XM_043216816.1 mRNA upstream 124678 19404321 ~ 19451211 (+) True LOC122323148
XM_043216913.1 mRNA upstream 187226 19380035 ~ 19388663 (+) False slitrk3a
XM_043216914.1 mRNA upstream 187226 19382549 ~ 19388663 (+) True slitrk3a
XM_043216915.1 mRNA upstream 187226 19382938 ~ 19388663 (+) False slitrk3a
XM_043216867.1 mRNA upstream 287333 19275350 ~ 19288556 (+) False LOC122323181
XM_043264320.1 mRNA downstream 23853 19600012 ~ 19603818 (+) True LOC122362761
XM_043264321.1 mRNA downstream 48053 19624212 ~ 19625612 (+) True LOC122362762
XM_043216837.1 mRNA downstream 308975 19885134 ~ 19901478 (+) True serpini1
XM_043216839.1 mRNA downstream 326987 19903146 ~ 19908222 (+) True LOC122323160
XM_043216825.1 mRNA downstream 352067 19928226 ~ 19935759 (+) True LOC122323153
TU188266 other upstream 734354 18777768 ~ 18841535 (+) False G127500
TU188268 other upstream 793730 18777768 ~ 18782159 (+) True G127500
TU188207 other upstream 1014279 18560366 ~ 18561610 (+) False G127456
TU188208 other upstream 1014279 18560366 ~ 18561610 (+) False G127456
TU187968 other upstream 1435636 18138535 ~ 18140253 (+) True G127292
XR_006246956.1 other downstream 426845 20003004 ~ 20013786 (+) False wdr59
TU188630 other downstream 510536 20086695 ~ 20087581 (+) False zfhx3a
TU188799 other downstream 971668 20547827 ~ 20549318 (+) False glipr1b
XR_006246928.1 other downstream 974989 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU189467 other downstream 2824815 22400974 ~ 22406982 (+) True LOC122363143

Expression Profile