RNA id: XM_043264203.1


Basic Information

Item Value
RNA id XM_043264203.1
length 3088
RNA type mRNA
GC content 0.41
exon number 9
gene id LOC122362661
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 20634845 ~ 20641059 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGCGGCCGTGACGTGGCGTTACGCAAGCGCAGAGCCGACAGGGCTTCCTGACACCCGACGAGCATCACGCCGAAAAAAACTTTACACATTAGGGTTACTCCCGTAGTTATAGGTGATCTGCGTCCTCCATCATGGGTCTGACTATCTCATCGCTCTTCAGCAGACTGTTCGGAAAGAAACAGATGAGAATTCTCATGGTCGGCCTGGATGCTGCCGGCAAAACCACAATACTGTACAAACTCAAACTAGGAGAAATTGTGACCACCATTCCAACCATAGGTTTTAACGTAGAGACCGTTGAATACAAGAACATCTGCTTCACCGTGTGGGATGTGGGCGGCCAGGATAAGATTCGTCCTCTCTGGAGGCACTATTTTCAGAACACACAGGGTCTGATCTTTGTGGTGGACAGcaatgacagagagagagtggcCGAATCTGCGGAGGAGCTTTCTAAAATGTTGCAGGAAGATGAACTGAGGGACGCCGTGCTGCTGGTTTTCGCAAACAAACAGGATCTGCCGAATGCCATGGCCGTCAGTGAACTCACAGACAAACTTGGGCTGCAGAGTCTCCGCAGTAGAACGTGGTACGTCCAAGCGACCTGCGCTACACAGGGCACCGGACTCTATGAAGGACTGGACTGGTTATCCAATGAGCTCTCCAAACGCTAGTGGGCCTGTTAGGGGTTGAGATGGTTAGGTTTTTTTCTACGCGATCCATCATTCGCGGCGAAGGTTTGAGTGACCCAGGACTGTTTTCGCTGTAGGTCCGAGTGATGTTCTTCAGCCACGACGACACAAAGTTCTTtccatttataatttaaagttgAAATTGATTGACGTGTTTTATGTTTGTCATGCCATGTGAAATGTTTCGCTCAGGCGTGTTTCTTGAGCTTATTCGTGTTTGAATCTGACTGCTGAACGCAGGTTTAATGTATTGATGAACTTCATGTCTGGTTGAAATGGTTTGCTTTCCTAAACTGATGTGTAACAGATACAATCTATTTTACCCTATTATCATTACAaatttgtttgtgtattatatGTATCATATTGTTTTAGAATAAAACATAATTGTGAACTCATAATTGTGTTGAATGCGATACTTCTATTTTGGCCTTTAAATGCAGACTTTAAGTTTGTGTGTCCCGCTTTTTGGGAGCAGAAACAGTCAATGATTTGTGCTTTCACCAAATCAAAAGTGAATGCAATTGTAATTTTCTTAATTGCTGACAAATCAGAAAATCTCATTGTTGTACCAAGTTCTAAGCTGCGTTACTGCATCGGTCCAGCGGATGGCACCTGGAATTAAAAACTCCAGACAGCCGCACAGTAACTTCAGACGACTCAACGGTTAACTAATTGAAGAGCCGTGTTTGGTAGCCTCTGGAAAAAGTTTGTGTTTGAAGTGTATGCAAATACGCATACTGAGAGGTGTTTGAACTCCAACTGCTTGCATGTGCTGTGCCTTTGAGTGATtttcatcataaaatattttcctttttgtttgcaAATTTAGTACGATTGGTAAAGGGTTTAAATGTTCTCTGTCCATCCCTTTACATAAAGTGTATAAGTCCTAAAAACAGCGAAGAAAAGATGTTTAGTGCATTTGATAAGAAACTAAACTAAGATCAGACCACATCTGTAAACAACACCGTTAGAGGAGCCGccctgttgtgtgtgtgtgtgtgtgtgtgtctctctcttatTAATCAGGGTTAGATTTGGGTGTGGAGATCATTCCAGGACAAGATCTGAGCAGATAAATTACAGGAGGCATATAAATGTCATTCTGAAATTCTGTTTCCcaatttgttaatttatttgtaaccTACTTTGAATCTTAGATCTTACGAACACTACACAATATGACATACCACAGATTCCCGCTGTGGTATGGAGCAGAGTTATAAGAGTGCCGTTAGAGAAAAGTCACGCATTCTTGAGTTCCTTAGTCTACCTATAAGGAGAAATGAGCTCATACCGATCACGGTCCAAATCAAaggacatttttttctaaattcagCGCCTTTTAATGAGCTCCGTGTAAAACCCCAAATGAACTAGGATGAGAAAGTATCATTTTGTgtattctaattctaattttaattctttccTAATTTTGTCGTGTTTGGTTTCATTAAAgcattttgaattcatttaatgtttatactGTCATTATACTTTACAGAAAACAGGGAGAGCATTGTTTATgggttattttgttatttgctgttttctgttttgaaacttTGTGCCTTGTGCTTTTTGTCAGCAATTTGATACGCAGTTTTCATACACTTTGCGCTCTGTTTTATGATCtgcaaacatgtttaaaaacaaaggtaaCAAATGAGTTAATAGAGATTTAATAGCACTTAAAGAAAAATGCTGCTGCATTCCctgagaaacaacaacaaagactTCCTGTAGAGGGATCGGAAACTTACTGAGAAAACGAAACTCATGAAAGCAAGAGCAGCAGCTGTTCACAGATCAGTTAAGGGCGGGAACGTCAGCAGtataaatcacacacagacCCACTGATCGGTCCTTTCCACCGCCTTCTGCTGCCAGATCAACAAGATTTTATGGCGTTTCCTTTGTGGGACATGCCATGGAAACTTGGCTGGTTTTGTAGCACTAATGTcATCATGAAGAAGGCGGAGTTTCAGTAAATCCTTGCTGCCAGGGGCAGGGTCGTCTGACCCAGTGCCATTCATTTGATTGGTGCTGGTGTCCAGATGTGCAGAGGCCAGCGCAGTCTGCGGAGCCTGACATCAGTGTGACGTCTGACAATCAACGCGCAATGCCTCAAGacaaatactacaaaaaacAAGAACCGACCACAAAAAAACCAATGCATGTGATGCTAAAAGTGAACCAAGAAATCTCTTTAACATATTGCTGACTACTGAATAATGCTACAAATGTTACGTGAAGTGAAGAAGCGAAATTTTGGTGAAACCTTTGGTTTCTGCATTGCTTGGTTCAGTTTTTCCGGGGCAGAACTGGGAAACAAAGAGCCCCGGaacaaaatgtggaaaaaaaataaaaataaataaaaaacgacAAACAA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188827 lncRNA upstream 34326 20597207 ~ 20600519 (+) False terb1
TU188825 lncRNA upstream 45982 20586051 ~ 20588863 (+) True G127873
TU188810 lncRNA upstream 62535 20562083 ~ 20572310 (+) True G127860
TU188708 lncRNA upstream 251087 20325330 ~ 20383758 (+) True G127785
XR_006253183.1 lncRNA downstream 754 20641765 ~ 20647639 (+) True LOC122363025
TU188846 lncRNA downstream 795 20641806 ~ 20644285 (+) False LOC122363025
TU188847 lncRNA downstream 795 20641806 ~ 20647708 (+) False LOC122363025
XR_006253167.1 lncRNA downstream 228864 20869875 ~ 20887115 (+) True LOC122362840
TU188900 lncRNA downstream 253766 20894777 ~ 20937442 (+) True G127935
XM_043264204.1 mRNA upstream 1209 20629743 ~ 20633636 (+) True arf5
XM_043264178.1 mRNA upstream 16665 20609937 ~ 20618180 (+) True neto2b
XM_043264892.1 mRNA upstream 36226 20589684 ~ 20598619 (+) True terb1
XM_043264151.1 mRNA upstream 69539 20561835 ~ 20565306 (+) True syt1b
XM_043216580.1 mRNA upstream 78218 20551173 ~ 20556627 (+) True si:dkey-30c15.17
XM_043264894.1 mRNA downstream 7289 20648300 ~ 20653670 (+) True zgc:77752
XM_043265111.1 mRNA downstream 13521 20654532 ~ 20657823 (+) True odf3b
XM_043265109.1 mRNA downstream 13521 20654532 ~ 20657823 (+) False odf3b
XM_043263952.1 mRNA downstream 25742 20666753 ~ 20671837 (+) False rabl2
XM_043263951.1 mRNA downstream 26323 20667334 ~ 20671837 (+) True rabl2
XR_006246928.1 other upstream 78218 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU188799 other upstream 85527 20547827 ~ 20549318 (+) False glipr1b
TU188630 other upstream 547264 20086695 ~ 20087581 (+) False zfhx3a
XR_006246956.1 other upstream 621059 20003004 ~ 20013786 (+) False wdr59
TU188268 other upstream 1852686 18777768 ~ 18782159 (+) True G127500
TU189467 other downstream 1759963 22400974 ~ 22406982 (+) True LOC122363143
TU189495 other downstream 1793795 22434806 ~ 22438679 (+) True G128367
TU189951 other downstream 2816089 23457100 ~ 23579802 (+) False cdh13
TU189952 other downstream 3083625 23724636 ~ 23736846 (+) False cdh13
TU190171 other downstream 3808754 24449765 ~ 24457560 (+) True G128858

Expression Profile