RNA id: TU188799


Basic Information

Item Value
RNA id TU188799
length 587
RNA type TUCP
GC content 0.42
exon number 3
gene id glipr1b
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 20545992 ~ 20549357 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGCATGCATCGTGTGTTTCAGTTAATGTGGTCTACGAGCTTCAAGCTGGGCTGTGCTGTAAACGTGTGCTCGAAAGGCATCGAAAACTTCTCTTCTCACCCGGAATCCACTATTTTTGTGTGCAACTACGGCGATACGGGACACGTTCATGGTGTTACTCCATACATAGCAGGTGTGGCGTGCAGCGGTTGTGGGTCAGAGACTTGCAGAGACAACGTCTGTAGATATGATTGGTTCCCTGGGTGGGACTATGGCCCGCCCTCTTCAGCCTACAGTATTTCCCACTGGCTGACTAATCTTGGACTGTATCTACTAGGAGTTTGCTGGCTACTCCACTTTTATGCAACACATTAATGTGATTCTGTGAACCCGTTCCCTAACGTCTCAAACTTGAACCTTAAAATTTGCATCTCTCCATAATTTCGGTATGGTTGGATATTAAATTAGCAatcactgaaataataataagaaatctgtctataaatatacatgtatatttttcttttctgctgtgtgtaaatcatttatttacttagttCCATAGGcctgtaaatgcatttagaaaaagaGAATTGGCATCATAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188708 lncRNA upstream 164069 20325330 ~ 20383758 (+) True G127785
TU188734 lncRNA upstream 171992 20373854 ~ 20375835 (+) True G127800
TU188698 lncRNA upstream 266532 20256712 ~ 20281295 (+) True G127780
XR_006253191.1 lncRNA upstream 323243 20221304 ~ 20224584 (+) True LOC122363139
TU188681 lncRNA upstream 332596 20202748 ~ 20215231 (+) False G127766
TU188810 lncRNA downstream 12765 20562083 ~ 20572310 (+) True G127860
TU188825 lncRNA downstream 36733 20586051 ~ 20588863 (+) True G127873
TU188827 lncRNA downstream 47889 20597207 ~ 20600519 (+) False terb1
TU188764 lncRNA downstream 90698 20640016 ~ 20641059 (+) False LOC122362661
XR_006253183.1 lncRNA downstream 92447 20641765 ~ 20647639 (+) True LOC122363025
XM_043264099.1 mRNA upstream 9209 20532906 ~ 20538618 (+) True cers3b
XM_043216714.1 mRNA upstream 16248 20506031 ~ 20531579 (+) True LOC122323072
XM_043216717.1 mRNA upstream 16248 20506031 ~ 20531579 (+) False LOC122323072
XM_043216716.1 mRNA upstream 16248 20506031 ~ 20531579 (+) False LOC122323072
XM_043216718.1 mRNA upstream 16248 20506031 ~ 20531579 (+) False LOC122323072
XM_043216579.1 mRNA downstream 1830 20551148 ~ 20556627 (+) False si:dkey-30c15.17
XM_043216582.1 mRNA downstream 1840 20551158 ~ 20556627 (+) False si:dkey-30c15.17
XM_043216580.1 mRNA downstream 1855 20551173 ~ 20556627 (+) True si:dkey-30c15.17
XM_043264151.1 mRNA downstream 12517 20561835 ~ 20565306 (+) True syt1b
XM_043264892.1 mRNA downstream 40366 20589684 ~ 20598619 (+) True terb1
TU188630 other upstream 460246 20086695 ~ 20087581 (+) False zfhx3a
XR_006246956.1 other upstream 534041 20003004 ~ 20013786 (+) False wdr59
TU188266 other upstream 1706292 18777768 ~ 18841535 (+) False G127500
TU188268 other upstream 1765668 18777768 ~ 18782159 (+) True G127500
TU188207 other upstream 1986217 18560366 ~ 18561610 (+) False G127456
XR_006246928.1 other downstream 1830 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU189467 other downstream 1851656 22400974 ~ 22406982 (+) True LOC122363143
TU189495 other downstream 1885488 22434806 ~ 22438679 (+) True G128367
TU189951 other downstream 2907782 23457100 ~ 23579802 (+) False cdh13
TU189952 other downstream 3175318 23724636 ~ 23736846 (+) False cdh13

Expression Profile