RNA id: TU189193


Basic Information

Item Value
RNA id TU189193
length 802
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G128158
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 21165272 ~ 21166073 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CcgatttttaattgaattagtgAAGCTTTGggaagcaaaaaagaaaaagaaaagaacaactCAACAATTCCTCAGTCAGGCTTTCAAACATAATTTGAGCTTTTATGAATTATGGCGACACATTTTATTAGTTGTTCCCATTGGCATGTAAATCTAAGTGGGTAAATGAGAGAGCGGCAATAGCTGGGCAAACACTCCACTTCCATATTCAGAGCATATAAACACTCAATACATATTTAAAGCCATTCCCCATCAGTGAATCCAGGATGGATGGTCTGCTGGGACGCACCAGTGTGTGTGGTCAGACAGAATGAGCAGGATGTAGATCAATCCTTATTAAAACAGACCCCGAGAGAACACAAACTGGGACAGGCCCATAAAAAGCTAGTTGTGAGAGGACTAGTTAGGGATCTAAGCATATAAACAGATTATAATATTTGCTAAAACAGTTAAAGCAATCACCGTATGCCATATTCATCAAGCTGAGACTGATGACTACTAAATGAATCCCGCAGGGAATACAAAgggttattttaatttgttttcacagaTTGACGTGCACTTTGAATGCATTGCACATTGCATTCTCTTATAGTGTGTGTACAGGAAGGCACCAAATGAGCTGGAACTAAAGGGGGGTTTGGTTTAGAACAATGACCCAGATGAGCTGATCAAACATATGACATCAGCACGGTCCGCAGCCGGATCCCCCCGGGCTAGGGCTGCTTTTACGGCCCCACCGATCATCTGCATCACTGCTGCTGAGAAGAGGGCTTGTTGGGTCGGACCCAGCAATGCTGAC

Function

GO:

id name namespace
GO:0016832 aldehyde-lyase activity molecular_function
GO:0004332 fructose-bisphosphate aldolase activity molecular_function
GO:0004064 arylesterase activity molecular_function

KEGG:

id description
ko00030 Pentose phosphate pathway
ko05204 Chemical carcinogenesis - DNA adducts

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189192 lncRNA upstream 2521 21161886 ~ 21162751 (+) True G128157
TU189180 lncRNA upstream 36239 21128553 ~ 21129033 (+) True G128149
TU189179 lncRNA upstream 83981 21080769 ~ 21081291 (+) True G128148
TU188900 lncRNA upstream 227830 20894777 ~ 20937442 (+) True G127935
XR_006253167.1 lncRNA upstream 278157 20869875 ~ 20887115 (+) True LOC122362840
TU189266 lncRNA downstream 300705 21466778 ~ 21468553 (+) True G128216
TU189310 lncRNA downstream 472337 21638410 ~ 21641629 (+) True G128251
XR_006246944.1 lncRNA downstream 528373 21694446 ~ 21835021 (+) True LOC122323089
TU189407 lncRNA downstream 867598 22033671 ~ 22068953 (+) True G128318
TU189419 lncRNA downstream 943400 22109473 ~ 22110458 (+) True G128329
XM_043265023.1 mRNA upstream 10674 21136806 ~ 21154598 (+) True impdh1a
XM_043265024.1 mRNA upstream 10674 21136808 ~ 21154598 (+) False impdh1a
XM_043265025.1 mRNA upstream 10674 21136810 ~ 21154598 (+) False impdh1a
XM_043265027.1 mRNA upstream 10674 21140152 ~ 21154598 (+) False impdh1a
XM_043265138.1 mRNA upstream 184573 20973515 ~ 20980699 (+) True cpt1b
XM_043264860.1 mRNA downstream 1442 21167515 ~ 21174321 (+) True si:dkey-5i3.5
XM_043264861.1 mRNA downstream 8518 21174591 ~ 21176792 (+) True tmem243a
XM_043264859.1 mRNA downstream 10844 21176917 ~ 21193969 (+) False elapor2a
XM_043264856.1 mRNA downstream 10849 21176922 ~ 21193969 (+) True elapor2a
XM_043216928.1 mRNA downstream 130025 21296098 ~ 21328330 (+) True sema3d
XR_006246928.1 other upstream 608645 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU188799 other upstream 615954 20547827 ~ 20549318 (+) False glipr1b
TU188630 other upstream 1077691 20086695 ~ 20087581 (+) False zfhx3a
XR_006246956.1 other upstream 1151486 20003004 ~ 20013786 (+) False wdr59
TU188268 other upstream 2383113 18777768 ~ 18782159 (+) True G127500
TU189467 other downstream 1234901 22400974 ~ 22406982 (+) True LOC122363143
TU189495 other downstream 1268733 22434806 ~ 22438679 (+) True G128367
TU189951 other downstream 2291027 23457100 ~ 23579802 (+) False cdh13
TU189952 other downstream 2558563 23724636 ~ 23736846 (+) False cdh13
TU190171 other downstream 3283692 24449765 ~ 24457560 (+) True G128858

Expression Profile