RNA id: XM_043216540.1


Basic Information

Item Value
RNA id XM_043216540.1
length 2547
RNA type mRNA
GC content 0.41
exon number 6
gene id LOC122322930
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 5473233 ~ 5476553 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGCAAGGAGGACTGTGGTACTTCAGCTATTGCTGCTTACTGTACATGGCAACTTTGTGCCAGCTTCATCACAAATGTGCAGCCTGCTTGGTCAGCCTGCCTTACCTTCACTTATTGCAGAAAGAGACATCAACATCGGAGCAATTTTCTCAATCCATAGAAATGCTCTCCAAAAGATGCATAATTATACTTCTAAGCCAGAGCCAATAACATGTGCCAGCTTAAGCCTCCGTGAGTTTAAATTTGCTCAGACGCTGATTTTTGCCATTGAGGAGATTAATAACAGCAAAAAGTTGCTACCTGATATTTATTTGGGCTATAAGATATATGACTCATGTCGCTCTATCGCTCAAACAATTATATCAGGCATTGCTCTGATGAATGGTTATGAAGCCACTTTGAGTGAAACGTCCTGCTCTAGACCACCAGCTGTGCATGCCATTGTTGGAGAGTCAACATCTTCACCCACCATTGGCTTGGCTTCTGTAGTTGGTCCATTCAACTTACCTGTTATCAGTCATTTTGCTACATGCGCATGTCTGAGTAACAGAAAAAGGTATCCATCCTTTTTCAGAACAATATCCAGTGATTATTACCAAAGCAGAGCTCTGGCTCAGCTTGTCAAGCACTTTGGCTGGACCTGGGTTGGGACGGTCAGGAGTCGCAATGACTATGGTAATAATGGAATTGCAGCATTTGAGGAGGCTGCGAAACAAGAGGGTGTTTGTATTGAATACTCAGAAGCCATATTAAGCAGCGATCCACAAGAACAGTTTCTGAAAACACTGGAAGTGATAAAAAAGGGCACAGCCAGGGTTGTGGTGGCTTTTATTGCTCTAggtgatttttttcccctgctgAAAGTAATTTCACAACACAACATAACGGGGATACAATGGGTTGGCAGTGAATCCTGGCTCACTTCTCGAACTCTTGCAGAAACAAAGGAATACAGTTTCCTTTCTGGAGCTGTGGGTTTTGCTATAGCAAATGCCAAACTCGTGGACTTGCGAGAATTCCTAGTGAATGTTCACCCTGATCAAGAACCAAACAATgaacttttaaaagaattttgGGAAACAGCGTTTCAGTGCTCTTTCAGGAACACTGGCAGTGATGGCTGTACTGGTTCAGAGAAACTGGAAGAGCTGCAAAATGAATACACTGATGTATCAGAGCTACGGATAGTAAATAAGGTATATACTGCAGTGTATGCTGTTGcatatacattacataatgTATTAAAAGACTTCAGATCCTCAGCCAACAGCAGCAAAGGAGAATGGCCCACACCACAAATGGTGTTGAAGTATATGAGGGACGTGAGATTCACTGTTAAAACAGGTGAAGAAATCTTCTTTGATGAAAGTGGTGATCCAGTGGCAAGATATGACCTTGTAAACTGGCAAAATGCTGAGGATGGAAGTATGCAATTTGAGCAAGTGGGGCTCTATGACAGCTCACTACCTTCACAACGTCTTCAGGTTGATCTGGAACACATACTATGGACAGAGGGAAGTAGACAGttgcctgtgtctgtgtgcagtgAGAGTTGCCCCCCCGGCACTAGGAAGGCTGTTCAAAAAGGTCGACCTGTCTGCTGTTATGACTGTATTCCATgtgcagaaggagaaatcagtaaTGAGACAGATTCTAGTGACTGCTTTCCTTGTGATTCGGAGTACTGGTCGAATGAAAGCAAAGACAGATGTGTATTAAAAGTGGTTGAATTCCTTTCATATTCAGAAATCATGGGAATTGTGCTTTGTGTTTTCTCATTCATTGGGGTGTTATTAACAGCAATGGtatcttttctgttttattttcataaagaaaCATCTATTGTAAGAGCAAACAACTCAGAGCTGAGCTTCCTGCTTCTCTTCTCACTcactctgtgttttctctgttctcttacTTTCATTGGTCGACCCACTGAGTGGTCCTGTATGTTGCGTCACACAGCATTTGGGATCACTTTTGTTCTCTGTATCTCCTGTGTTCTCGGGAAAACAATAGTTGTGTTAATGGCTTTCAAGGCCACACTTCCAGGTAACAGtgtcatgaaatggtttgggcCTCTTCAACAGAGACTCAGTGTTGTTTCCTTAACAATAGTACAAGTGATTATCTGTGTGCTTTGGTTAACAATATCCCCTCCTTTCCCGTATATGAATTTTAGCTATTACAGAGAAAAGATCATCCTAGAATGTAACTTAGGATCAGCTGTAGGTTTCTGGGCTGTTCTAGGTTATACTGGCCTGCTGTcaatcttgtgttttgttttagctttttttgctCGTAAGCTCCCTGATAACTTCAATGAAGCCAAGTTCATCACATTCAGTATGCTCATATTCTGTGCTGTCTGGCTTACATTTATCCCAGCTTATGTCAGTTCTCCTGGAAAATTTACTGTAGCTGTGCAGATATTTGCAATTTTAGCTTCAAGTTTTGGTTTACTGTTTTGCATATTTGCtccaaaatgttacataattttGTTAAAACCAGAGctaaacacaaagaaacaaatgatGAGGAAATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184034 lncRNA upstream 118253 5354713 ~ 5354980 (+) True G124595
TU183973 lncRNA upstream 289696 5011405 ~ 5183537 (+) True G124544
TU183978 lncRNA upstream 415395 5056750 ~ 5057838 (+) True G124547
TU183959 lncRNA upstream 565064 4903768 ~ 4908169 (+) True G124533
TU183923 lncRNA upstream 716614 4756230 ~ 4756619 (+) True G124506
TU184042 lncRNA downstream 15783 5492336 ~ 5494133 (+) False LOC122363125
TU184043 lncRNA downstream 18636 5495189 ~ 5495644 (+) False LOC122363125
TU184052 lncRNA downstream 147353 5623906 ~ 5624977 (+) False LOC122323196
TU184061 lncRNA downstream 183353 5659906 ~ 5660233 (+) True G124622
TU184121 lncRNA downstream 544688 6021241 ~ 6021636 (+) True G124672
XM_043216489.1 mRNA upstream 11999 5457833 ~ 5461234 (+) True LOC122322890
XM_043265108.1 mRNA upstream 19494 5450373 ~ 5453739 (+) True LOC122363145
XM_043265123.1 mRNA upstream 35133 5434874 ~ 5438100 (+) True LOC122363154
XM_043265114.1 mRNA upstream 44269 5425666 ~ 5428964 (+) True LOC122363149
XM_043216761.1 mRNA upstream 51517 5418484 ~ 5421716 (+) True LOC122323107
XM_043265073.1 mRNA downstream 15684 5492237 ~ 5495793 (+) True LOC122363125
XM_043265140.1 mRNA downstream 27217 5503770 ~ 5506863 (+) True LOC122363164
XM_043263979.1 mRNA downstream 51730 5528283 ~ 5531517 (+) True LOC122362505
XM_043263977.1 mRNA downstream 57222 5533775 ~ 5537144 (+) True LOC122362504
XM_043263981.1 mRNA downstream 62282 5538835 ~ 5541886 (+) True LOC122362507
TU184037 other upstream 77921 5394895 ~ 5395312 (+) True G124598
TU184019 other upstream 243287 5228563 ~ 5229946 (+) True G124580
TU184016 other upstream 247176 5225808 ~ 5226057 (+) True G124577
TU183987 other upstream 332562 5139490 ~ 5140671 (+) True G124553
TU183981 other upstream 362600 5071645 ~ 5110633 (+) True G124548
TU184051 other downstream 146900 5623453 ~ 5629653 (+) True G124612
TU184110 other downstream 499657 5976210 ~ 5979282 (+) True G124661
TU184178 other downstream 814938 6291491 ~ 6291925 (+) True G124707
TU184202 other downstream 1062694 6539247 ~ 6540907 (+) True G124727
TU184395 other downstream 1549765 7026318 ~ 7027135 (+) True G124881

Expression Profile