RNA id: XM_043216580.1


Basic Information

Item Value
RNA id XM_043216580.1
length 2840
RNA type mRNA
GC content 0.44
exon number 9
gene id si:dkey-30c15.17
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 20551148 ~ 20556627 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGCCTTTGTGAGTGAGCTCTATACAGAAGAGAACTGACAACAGTAGTACTAGGCTGACTGAGTTGAAGACTTTAAAGCACACGCAGCGTCcttgtgagcgagtgtgtgagagagaaatgtTTGTGAATGCAGGCCAGTCTCATTGATGTCACGCGAAATTCAACAGAGGCACAAGCCAGAGTCGGATTCCTCTACACACTCGCTGTTTGCTGACTGAAGACAAATGACAGTTATGGGAAGGTGGTTACAGGATTTTATAGCATAAAACTTTGTGGATTTAGGCAGCTCAGATTCTCCTGCTAAAGTAAGTGGAACTAATTCTATTCTGATTGACTCTGTGGTTTCAAAAGCCATCATGGTGTTGTTTGGCTATACATTGATTGTGGTCACTCTACATTCGATGATGGCAACTGTGAGAGGAGGTGAAACTCAACAAACTGGGACTCGGATAATGATGTTCAACATCCCAAACACTGAACATAATGAAACACGTGAAAGACTGGATGACGCTTTAAACCTGCTCAAGAGTCTAGAGTTTTATGCTAGTGCTGATGAATCTTCAAGAAACACTTTGGCTGAATCGACTGATATGCATTCAGTGGCTGATTCCACATCAACCAGAACTGAATGTGATAAAGTTAATTGTAAAGATATTGTACACAAGGAGCCTAAGAAGGATGAGAAGTTAAATAAGGTGGGATGTGATGGCGAATGCGTGATTAATTCCCTGGATAACACCTCGTCTAAAGCCTTGGAAGCTACCTCCAGTGGAGATCCAGTGGTCATCACACATCTCGGGCGAGTTCGTGGCCTTACTCTGGATAAAGCTCATGTGTTTTATGGGATTCCATATGCAGACCCTCCTTTGGGGGACAAACGCTGGGCTCCTCCTTCATCTGTGTCACCTTGGACGTATACTTATGACGCCACATTTCCGCGCCCTGCTTGCATGCAGATGTGTGCTGGTGAGTTCTCTCGGATGTGTCCTCCTAAGGTTAGCGAGGACTGCCTATATCTGAATGTCTTTGTTCCTGTGAGCGTCAACCTGTCGTTGCCGATAACAACAGCCTTGCCAGTAATGGTGTGGATTCACGGTGGTGACTTCATCGCTGGCTCCGCCTCCAAACCTCTATATGACGGCCGCTTCATCAGTAACTATAGCAACACAGTAGTTGTCAACATGGAGTATCGTCTTGGTGCATTTGGCTTCTTAGTCACAGGCAAAGATCCCGAGAGCTCCGCAGTGGGGAATTATGGGATTCTAGACCAGCAGGCAGCACTGCGCTGGGTCCAAGAAAACATAGCAGATTTTGGAGGAGACCCAAATAAGGTTACTCTGTTTAGCGAGAGCGCTGGTGCCCAATCAGTGTGTCTTCATCTGATGATGAGGAGCAGCGAGTCTTTGTTTAGACACGCAGCCATACAGAGTTTACCATTCTCTTTACCACTGAAAACCagATGGGATGCTGTGAAACTGGGCTGGGATTTTGCTAAACTGACTAATTGCTCAGCATTCGATCTGCCCTGTCTGCGCTCTCTCAGCTCACATGACGTGCTCAACGCCCAGGTTGAATCAGGTTCAAAGATCATCAACCCCTTCCGTTTCCTGGAGGTCTTTGAGACATGGGGGCCGTTCATTGATGGAGAACTGATCCGGgaacagccaatcacagcctTCCAAACAGGCCACTGGCAGAGTTACAAGCCTGTCATACTTGGTACAACCTCAGAGGAAGGGGTGACCTTTGTGTACAACATTTTCAACCGGTCCGTATCAACACTGGAATGTGTGCTCTATACTGCCGCCATCTTTAAGCAACATGCGCTTAAAATTCTGCACAAATACATTCCTTTCTACCGAGACCAGGACAGAAGAGTGATGCTTTCTCAAATCGTCACGGATTACATGTTTCTGTGTCCGACTCGATTTTCTGCTCGTTCTGGAGTAAAAGCCGGCGGAGCCGTTTGGTTGTATGTATTTGACCACGCTCCGTCCGATCACAACATATGGGAGGGGCTTCCGTTCTGCTACAATCATACCTGCCACGGGGCGGAGCTGCCCTTTCTCTTTGACTCCGCCCCCAGCACCAACTTCACACTTACGCCTGAAGAGACCCTTCTGGCAAATCGGATGGCGTGTTACTGGGGAACGTTCGCCCATACGGGGAACCCAAACTCTCGAAGCGAACAGACACACTTCTGCTCACAGCAGAGACTGCCTGTTTGGCCTCGGTACACGGCTTCAGAGGGCTGGCCCATCCTGAATCTGACTCTACCCTCACACCCACAGCACGGGGACAGAGACCATTTCTGTGACTTCTGGGATCGGCTGGACATCTATTGAAGGGAGGAGATTGAGCTGAGCTTTTTTGCTATTCATtaaccagtattttttttttattcaaatctcATCTTTATGTATTATCAGTGATTGGGCCAgtgtaataacaaaaatatatataaagcacattATAATTCAAAAGTCAggagtatttttttatgttttcgaAATAAGCCTCTTCAGCAAAATcagtaaaactgtgaaatattatacatttcatattcaaatttaaattcttaaatcttgcttgtttttttaatattatttaaatttattcctgtgatacaacgctaaatttttacattattaactgcagtcttcagttcatgaatcattataatatgctgattcacTTTTCAAGAAACAgttcttaatattattaatgctgaaaacagttgtgctgtttaatatacatttgtgGAAACTGCGTTTTGTGATTAACaaaattttcaaaagaaaaattaatgttttgtaacataataaatgtctttacagtcA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188708 lncRNA upstream 167415 20325330 ~ 20383758 (+) True G127785
TU188734 lncRNA upstream 175338 20373854 ~ 20375835 (+) True G127800
TU188698 lncRNA upstream 269878 20256712 ~ 20281295 (+) True G127780
XR_006253191.1 lncRNA upstream 326589 20221304 ~ 20224584 (+) True LOC122363139
TU188681 lncRNA upstream 335942 20202748 ~ 20215231 (+) False G127766
TU188810 lncRNA downstream 5456 20562083 ~ 20572310 (+) True G127860
TU188825 lncRNA downstream 29424 20586051 ~ 20588863 (+) True G127873
TU188827 lncRNA downstream 40580 20597207 ~ 20600519 (+) False terb1
TU188764 lncRNA downstream 83389 20640016 ~ 20641059 (+) False LOC122362661
XR_006253183.1 lncRNA downstream 85138 20641765 ~ 20647639 (+) True LOC122363025
XM_043263997.1 mRNA upstream 1816 20545992 ~ 20549357 (+) True glipr1b
XM_043264099.1 mRNA upstream 12555 20532906 ~ 20538618 (+) True cers3b
XM_043216717.1 mRNA upstream 19594 20506031 ~ 20531579 (+) False LOC122323072
XM_043264151.1 mRNA downstream 5208 20561835 ~ 20565306 (+) True syt1b
XM_043264892.1 mRNA downstream 33057 20589684 ~ 20598619 (+) True terb1
XM_043264178.1 mRNA downstream 53310 20609937 ~ 20618180 (+) True neto2b
XM_043264204.1 mRNA downstream 73116 20629743 ~ 20633636 (+) True arf5
XM_043264202.1 mRNA downstream 78218 20634845 ~ 20641011 (+) True LOC122362661
TU188799 other upstream 1855 20547827 ~ 20549318 (+) False glipr1b
TU188630 other upstream 463592 20086695 ~ 20087581 (+) False zfhx3a
XR_006246956.1 other upstream 537387 20003004 ~ 20013786 (+) False wdr59
TU188266 other upstream 1709638 18777768 ~ 18841535 (+) False G127500
TU189467 other downstream 1844347 22400974 ~ 22406982 (+) True LOC122363143
TU189495 other downstream 1878179 22434806 ~ 22438679 (+) True G128367
TU189951 other downstream 2900473 23457100 ~ 23579802 (+) False cdh13
TU189952 other downstream 3168009 23724636 ~ 23736846 (+) False cdh13
TU190171 other downstream 3893138 24449765 ~ 24457560 (+) True G128858

Expression Profile