RNA id: XM_043216670.1


Basic Information

Item Value
RNA id XM_043216670.1
length 3625
RNA type mRNA
GC content 0.41
exon number 14
gene id lctlb
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 4726450 ~ 4735467 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATGCTTTGTGGATACATCAGTTTTTCAGACTTGCAATTATTTGTCTAAATGCATCCATTAATTGCTTTTCACACATTGGTACTTGATAAAATACAAGTGGTGGATTGCTCGAAGTCTCAATATCTTAGTAACATAAAAGTCAGAGCAAGACCTGAAACCTGTTGTATAATATTTGGGTCAGTTGATTCCACCATATGCTGTCATTGTTGTAGTAAACACAGGAGTATTAGCCTCTCCAACATTAACTTTGCTTACAGAGTGAAACCCTCATTTGTAAGAGATCTGTCCACCGTTGCAAAATGCGATCACAGTCCATTGACCCTCAATAGGCAGGCTTTTGGGTCTACAGTGGGGTCATGAGACCGCTTTTAGAACAACACAGTGCTTTGCCACCCAAGCTGAACAGTAACATACTCTATATGACAACCTTCAAACTTCAAAACTAGATGTGATATCAAGGTGTGGGATAGTTCTCATCGCATTTAAAGGCATTCCCATGTGGAACTAATGCAAATTCTGAGAAAGGTATGTTCAAATCAGGAGTATGAGCATGAAAATTGTCATTGATTAGTCAGTGGTCATTCATTACTGGGCAAATTGCATAGTGTTTAGTGAAAGCGAATGATGTGTAGTGAAAGGGTAACTACCTCTCAGATCAGGAGAGAGTGGTGCTGATGAGAGTCACTGAGCTGGAGCTGAGATCTGGAATATGATGCTGTCACATCGTGTTGGACGAGCGTGTCATGTGCTTGTGCTGGTGTTGTGTCTGTCTGCGGCTGAGGACTTCGACTGGTCAGCGAACAACCACGACTCCTTCTATTATGGCACTTTTCCAAATGGATTTTCGTGGGGTGCCGGCGGTTCAGCCTATCAAACAGAAGGAGCCTGGGACAAAGATGGGAAAGGACTGAGTATCTGGGATGTGTTCACTCATAAGAAGGGAAAGACATTCCTGAATGATACTGGAGACTCTTCATGTGAGGGATACTACAAAATCAAGGATGATATTTCATTGATAAAAGAGCTGAATCTAAATCATTATCGGTTTTCCATCTCCTGGCCCAGGATCATGCCAACTGGAATCAGGTCTGACCACGTGAATGAGAAAGGGGTGAAGTACTACAGCGCTCTTATTGATGAGCTGCTTGAACACAATATCACTCCTATTGTGACCCTTTATCACTGGGACCTGCCACAGGTTTTGCAGGAGAAATATGGCGGATGGCAGAACATCAGCATGATTAATTTTTTCAACAACTTTGCCAATCTTTGCTTTGAACGCTTTGGGGACCGTGTCAAATACTGGATAACTTTTAATAACCCATGGTCAGTAGCAGTGGAAGGATATGAAACTGGAGAACATGCTCCTGGACTGAAGCTCAGGGGCACCGGAGCCTACAGAGCAGCTCACCACATCATTAAGGCACATGCTAAGGTTTGGCACACTTACGACACCCAgtggagaaacaaacaaaaagGTTTGGTTGGCATTTCGCTATCTGGGGACTGGGGAGAGCCTGTGGACATTACTAACCAGAAAGACATCGAAGCTGCAGAGAGATATGTCCAGTTTTACATAGGCTGGTTTGCTACACCCATCTTTCATGGAGATTATCCTCAAGCGATGAAGGATTTCATAGGGAGGAAAAGCGCACAACAGGGTTTGGGAACATCTCGCCTTCCCACCTTTTCTTCTCAGGAGAAGAGTTACATCAAAGGCACTTCTGACTTCCTAGGTGTGGGGCACTTCACCACACGCTACATCACCCAAAAGAGCTTCCCTTCAAACCGTGGCTCCACCTACTTCTCAGATCGGGATGTAGCAGAACTGGTCGACCCACGTTGGCCTGATCCTGGTTCAGAGTGGCTCTACTCGGTTCCTTGGGGCTTCCGCCGTCTGCTCAACTTCATAAAGACTCAGTATGGGAACCCCATGATCTTCATCACTGAGAACGGGGTCTCAGAGAAAATGATGTGCACAGAACTGTGTGATGACTGGAGGATACAGTATTACAAGGGTTACATCAATGAGATGCTAAAAGCTATTAGAGATGGAGTGAATGTGAAGGGGTACACTGCTTGGTCCCTTCTGGACAAGTTTGAGTGGGATGAAGGCTATTCAGAGAGGTTTGGCCTTTACTATGTGGACTTCAGGAACAAAAATAAGCCTCGCTACCCCAAGGCCTCTGTTCAGTTCTACAAACGCATCATTAAATATAATGGATTTCCCAATCAAAGAGAGGTTGAGAACTGGAAGAGGAAAGCTACAGAGACTTGCTCCACCAGCAATCAGCTCCTGGCTGCAGaGGAACAGCGGAATACGGCTGCCAATATTCTAAGACTTATTCATGATCCTTTAACCAGCCACATGGAGATGGTGACCGAGGTTGTGGTTCCCACAGTGTGCACCCTCTGCATTTTGATCAGTGCTGTCTTTCTCATGTTCCTACTCCGCAAACGAAActaactcacttttttttttttaaaaaactgaatttggCCATTGTTTCTTGGTTAATAATGTTTGCATTGAGGAGGTTAAGGACACTTTGCTGAATTGAAATGATATAGGCAAACAGTCATCTGCTTTTGGAAATTATTTATCTCTTTGTGAACTAAGCTTTTTGTCCTAAACCCGGTTGAAGCTTAAAGTGCCCCCATTTTGCCAGTTTAAGGCTCCTAATACTGTTCTGGGAGTCTCCTACAATAGGTTACATTGTATGCATGCAGgatgaaaaatgcttttattttcttaaaatatgcttttaataacaatttttcCAGCGATTACTTCGAAACATTTCTAAGATTCAGCCTCTCTAAACCACGAGCttactctgctctgattggtcagatggcccagTCTGTAGTGATTAGTGTACCACAGAGCAGTCATCTGACATGTTTGTGGGCAGCGTTGTGTTGTTTGTGGCCAGCCAACATAGATGGGAATTATGCAAACAGATTCAAATGACTAAACATCTTTAGGCTACATAGAATCgtttctttattttgggagataataactttatttatcgTGCACTCTTGAATTTATTTCGCAGatcatttacattcacatactACATAACTACATTAAACACTGAATGAAAATATTGGAAATGGCGTAATAGGGGCGCTTTAAACTTCTGAAAACTCAAGTTATTGCATATACACTACTATTTATAACTTCGGGGTCAGGgcgattttttttcccccccaagaaatacagattttttattctgcaagagTGCATTaatattgatcaaaagtgacaatctTAAAAAtctacaagattttttttttaaactaaggCTGCAGTTTtcaactttctattaatcaaaaaccctaaaaatgtaacaatgtttCCACGGAAAAATTATGCagaacagttatttaaaaactgtcatATTTTCACAGTACTGTTTTTGAATGTATTAGCAAATAAATGTAGGACCAGTGATTGCGActcttctttaaaaacaaaaaatgcccccaaacttttgaacagtattgtgcataaacaaattaaaaccgttccattcattaaataaataaataaataaataaatatgccatttgacatttgaaacaacattttctGTGAGTTCATTTCTATGATATGGA

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006246939.1 lncRNA upstream 34506 4688034 ~ 4691944 (+) True LOC122323045
TU183828 lncRNA upstream 248571 4476547 ~ 4477879 (+) True G124425
TU183831 lncRNA upstream 264326 4461845 ~ 4462124 (+) True G124427
TU183657 lncRNA upstream 542799 4182733 ~ 4183651 (+) True G124295
TU183656 lncRNA upstream 544059 4181385 ~ 4182391 (+) True G124294
TU183914 lncRNA downstream 9293 4744760 ~ 4745307 (+) True G124497
TU183915 lncRNA downstream 10136 4745603 ~ 4745835 (+) True G124498
TU183916 lncRNA downstream 11038 4746505 ~ 4747183 (+) True G124499
TU183918 lncRNA downstream 11834 4747301 ~ 4748814 (+) True G124501
TU183917 lncRNA downstream 13928 4749395 ~ 4749694 (+) True G124500
XM_043216674.1 mRNA upstream 838 4723039 ~ 4725612 (+) True snapc5
XM_043264727.1 mRNA upstream 137748 4585189 ~ 4588702 (+) True aagab
XM_043216916.1 mRNA upstream 424572 4292237 ~ 4301878 (+) True kif23
XM_043216673.1 mRNA downstream 4676 4740143 ~ 4743910 (+) True rpl4
XM_043216538.1 mRNA downstream 24161 4759628 ~ 4795836 (+) True LOC122322928
XM_043265035.1 mRNA downstream 579455 5314922 ~ 5318185 (+) True LOC122363106
XM_043216554.1 mRNA downstream 595736 5331203 ~ 5332855 (+) True LOC122322945
XM_043216555.1 mRNA downstream 611697 5347164 ~ 5350497 (+) True LOC122322946
XR_006253139.1 other upstream 982694 3719888 ~ 3743756 (+) False nrn1la
TU183320 other upstream 1171760 3511966 ~ 3554690 (+) True tmem170a
TU183022 other upstream 2420872 2302526 ~ 2305578 (+) False plin1
TU182722 other upstream 2724160 2001786 ~ 2002290 (+) True G123664
TU182587 other upstream 3154519 1565426 ~ 1571931 (+) True G123568
XR_006246974.1 other downstream 5401 4740868 ~ 4740965 (+) True LOC122323235
XR_006246980.1 other downstream 5788 4741255 ~ 4741324 (+) True LOC122323241
XR_006246981.1 other downstream 6087 4741554 ~ 4741651 (+) True LOC122323242
XR_006246975.1 other downstream 6840 4742307 ~ 4742435 (+) True LOC122323236
TU183924 other downstream 24170 4759637 ~ 4793251 (+) False LOC122322928

Expression Profile