RNA id: XM_043216680.1


Basic Information

Item Value
RNA id XM_043216680.1
length 5738
RNA type mRNA
GC content 0.42
exon number 14
gene id LOC122323046
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 1816402 ~ 1907583 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCAAAGGCCAGTATTTGTTCGACCTCATCTGCCATCATCTAAACCTGCTGGAGAAGGACTATTTTGGCATAAGATATGTTGATCCGGATAAGCAACGGCACTGGTTGGAGTTCACCAAGTCAATTTCTAAGCAGATGAAATCAAGATACATCTACCTGAGAAGCAAAACTGCATAAGATAAGCACAACCTCCATTCACAATGTGTCTGCGGGTAAAGTTCTACCCACCAGATCCTGCTGCTCTAAAGGAGGAGATCACCAGGTATCTCGTCTTCCTCCAGATCAAAAGAGATCTGTACCACGGTCGTCTCCTCTGCAAAACGTCTGATGCTGCCATGTTGGCTGCCTACATCTTACAAGCTGAGATTGGAGACTACGACCCAGGAAAGCATCCAGAGGGCTACAGCTCAAAGTTCCAGTTCTTCCCCAAGCACTCAGAGAAGCTGGAAAGAAGGATTGCAGAGATTCACAAGACCGAGTTAATAGGTCAAACTCCAGAAACAGCTGAGCTGAAGTTCCTGCAGAAAGCACAAATGCTTGAAACATACGGCGTGGATCCTCATCCGTGCAAGGATGTATCTGGTAACCCGGCTTTCCTCGCCTTCACCCCGTTCGGTTTTGTCGTGCTACAGGGGAACAAAAGAGTCCATTTCCTCAAGTGGAACGAGGTGACCAAACTGAAGTTTGAGGGAAAGACATTCCATATATATGCAAATCAGAAGGAgGACAAAAAGATCATCTTGACGTACTTTGCACCAACTCCAGAGGCCTGCAAGCACCTTTGGAAATGCGGTGTGGAAAATCAAGCCTTCTACAAGCTGGAGAAGTCGAGCCAGGTTCGTACAGTGTCCAGCAGTAACCTGTTCTTCAAGGGGAGTCGTTTCCGCTACAGtgGAAGAGTAGCCAAAGAGGTAATGGAGCAGAGTGCAAAAATTAAACGGGAACCTCCAGAAATACACAGGGCTGGCTTGGTGCCCAGCAGAAGCTGTCCATCCATCACACACGGACCACGGCTGAGCAGTGTCCCGCGGACCCGCCGGAGAGCCGTACACATATCCATCATGGAAGGTTTGGAATCCTTGCGGGACAGCGCCCACTCCACCCCGGTGCGCTCCGTGTCCCACGGTGACTCCTTCATCCCACGTTCACGGAGCCAGGTGACGGACTCCGGCGACGGGACGGCGGTCATCTCCGATGAGACGTACAGTCCCTCGGACAGCGTGCTGCCCACACCGGTGGCCGAACACAGCCTGGAGCTGGCGGTCGCGCGCCAGATCAATGGCGCCCCCTGCAGCATCGAGGAGGAGAAAGAATCGGAGGCGGGCACGCCCTCCGTGGGCGACGTGGCAGAGTTAGGAGCGGACAGTAGGGCGGCGGGCCCCTTGCAGAGCGCAGGCAGGGAGGCTGCGCTCAGCGAGACGGAACAGGTGAATAAGTTTGTTTTAAGTGTTCTCCGTCTGCTCCTTGTGACCATTGGACTCCTCTTTGTCttgctcctcctcctcatcatcctcacTGAGTCCGACCTTGACATTGCATTTTTACGTGATATCCGCCAGACCCCCGAGTTTGAGCAGTTCCATTACGAATACTTTTGTCCCCTCAGACGGTGGTTTGCCTGCAAGCTCCGCTGGGTGGGCGGGCTGCTCATTAACAAGTGAAAATGAGGCACTAAAGCTCGTTAAGCCTCCCTTATTGGGGTCGAGAAGACGCTAAACacgtggagagagagagagagagagagagagagagacggagggcATCGACCTGTCCCATGAACCCAGCTTCTTTCATGACACTCCTGCTGACACACGGTGGACCACCAGGCCCACAGCTCCTCTTCTCTTCCACTTTTAGTTCTTTCTCCCCCGTCCATTTTTACCCTTTTATTTTtgtcgtcttttttttttttcttacaaagacaatttttttttttgcttttggtttCCTTATTTTGGATTTCAGGTCATTTcaggtattttatttttacaaaaaaacgagaaaaaaaaaacacaaaacttaaTTCAAAGACTTGAGAAGAATATATCGTTCCTTAAATAgggaatatgaaatattttgttgcaACGAGAACGTTGCCTtcgtttctatttattttaaaataatagttattaaaaaGTCTTATTAAAGAATGTGGTGCATTAAGTCGAGTTGGTACGGTATAGTGGGTTCGGAAAGCCCGAGAAAGTTTGGAAAAACCAATGCTTTTCTGAGTTTATGCATAATTCATATCCATCCGTCATGTAACTCTTAGTAAATTCTGAAGGCTGCTATAATTTACCACGTCAATGATCAGATCAGCAGAGGGTTGTATGTAAGGTAAGAATGTGCAAGTTATTTTGGAAGCGGGAGCTGAGGAAAGACTGGAAATGatgttatttgaataaaatcgATGGGTACATTTGAGTTCTGTATTTGGTGGCTTGAGTTTTAGGGTGTCAAATACGTTTTTAGGAATATAATTGTGTTTAGGCGGTAGCAAGCTGTGAAGTAGAATTAAAAAGGTTCTTTCTAATGGATACAGAAAACTTAATTGGTATAAATTGTGTTCTGTCATGTGACCCAATAGTGTCGGTATCTGTTAAAGTTAACACGATTGATTTAAAATCAACTAGTACCCATAGATCCAATCTAGCTACAGTAGATGTGCAATACTGTAAGGGTTTGGTTTTTAAGAAATAAGTACATCCATTTCTTTTCACCAGTATGTgtatttgctttgctttgttattataatttattattattttttaattttccattttgaGTCTCTCAATAGAAAGAAATCCCGTtgtataaagtaattttttattccATATCGACCTTGGTTTTAAGTTTGTATTCTGTGGATATCATGCTCTGATTATTCTTAATTACAATAACAATGCTGTACTTTTTGTACAAAAAGTAGTTAGTTTCCTAATATATCGACAGTTTTTCcatgtatattttaacagaaactgaaatgttattttgttattgaaaattaaattataccTTTTTTAGCTCTGTGTTCCAGATGAGGTCTAGAATCAATGGCGTTTCTGTCAAGGGAGACACGGGAAAGATTTTAATCCAGATCTGCAATCTATTTCCAATTCACTCACTCAACCGGTAATGAGAAAACCGTCCCTGAGCTTTGTATATCGGCCCTGCATTCGAACGATGCTGAAGACTTTATACACAGTTTAGCCCAAATACCATgcgtgtatgtttgtgtgtgtgtgtgtatgctcatattttaatgaatttatgtttttggcAATATGTACTAGAAGGCCAGGTTTAGTCTTCGGTACACGAATTCCTGATTATTTGAAGACAGAAGGATTCTTCCAGTGGCATGCAAGTTGGACAGGGTTTTATTTTACCACGATCTATTTTATGCCTGCCCCTTTGAAACTGCTATcgatgtaattgtttttgtatttgagaAGGAAGTGAATTGCGGAAGGAGCGGACTTATTTTAGTGTACAGTGAGAAAGTCCGGGGGGTGAGACGGGTATCAACTACTGATAATTAGGAGATGTTTTAGATCTTACACTGGAACtcacaataataaacattagTTTGCGGCAGCTCGCGAGCTTGGCTTCACTAGTAGTTATTTTCAATGAACGTGGTTCAATCCACCAATCAGTCTGCTGTTGGGTTTGAGGCCAGAATCGCTATGgtgctagtaaaaaaaaaaaatcggagaGGCCTGAGATCGTTTTAGGAAGCAGGTGACTGTAACAGTAATGGGTTTGCTAGCCGGATTGTGCAGTCTGGTCACACGCCTTTATAACCATTTGGTAGAACCGCTGTCTTCCACCGACCTCAGGAGCTGAAACCGATTTTTGCTACGATGAACAAATGAGAGTTGCATGGAAAACCGTAGCGGAAACTGCTGAGACGcatggaaaagagagagagggccATTGGAGTTACGCATGTCTCTTACCTTGACAAGTAtccatgcatgcatttgtaacaTCTCTGATGTGCCAAATTATAACAGCGTTGTGGTGGCATAAGcccatttatatttttgtagaatATGACGGTTGTTTTCACAGTACAGTAATACAATGGTGTTGCTCCGAGTACTTGCATGCCATTGAGGATGGGGTTTGTTTTTAGAATAACAATAAACGGATTTTGAGccgacgaaaaaaaaaaagcgtggaAGATCAGTcaagtttttgaaaaataaaagaattgaaGTTGATTGAATTTTACTCATTGACAGCATTATGTAGCCTCTCAGTGGTCAGTCCTGCATGGCAGCGCCATTCAATAAGCAATAACCTGAATTATAGAATCATAAAGATGAATCATTTTGATGGTTTTTGTGCTGTTGTGTAGCAAGTCAGACTACCTGATGTTTTCTAAGGAGTTTGGAATGAATCCATTTCCTTTTAAGTTAGATGCAAAACTGCGTATTAAAAGGCTCATTTTATATGATGATTATTGCCAAAATTTGCTACATTTTATACTCATTGTGAGCACTTGACATCTCGTTCCGATCCTGAACCGTCGTTTCCTGAATTTTATGTTTCTCTTCATCCTTGAAATCCTATTGCACAAGTTTCAACTGGTGCGCTGCTTCTTAGACTAGTAGATCAAGGGCAATTGCTACTACTGTCCTTGCGCTCATCTACTTCATACTTTTGTCTCTAGACAGTTTTCTTGTACTGTACGGAATGGCCACGTTTGACTGTGATGAATGCAAGGGTCCCGTAAAGGACAATTGTCAGCTAATTTGGATCATTTCTGTAATTATCTAACTGGGTTATTTCACAAGGTCCCTCTGTGAACTTTGTACAGAAGTATTTTTATGCTTCTTAGTATGCAAGTGTCGGTATAATAAAGTTAAACACTTACCATGACACTTATAAAAAGTAGACTTTCAGGAATATAACTGTACACCGCAGAAAAAGCACTTCACTGGCTTCAAATATACCTTGACAGCATGAACAAAATGTTACAGCTTCAAGCAAGCCTATTAAAGATGGTGATTTTAATGTTGAAGATCTGGTACTGATGGATACAGCTCTATTGTGAAATCGTAACGAGTGGCTGCTGATCTGTGAAGATTTGGACAGCATTCCAAGTACGGTCAGGATGTCCTCCGTGTTTCTAAAAGATGCCTAGAACTACTTGCATTAGACAGCAGCTACACAACGTCTCCGATCGACTTGGCAAGGTTCTGATTAACATTCTACCAGGGACTTTAAATTCCATCATCATTAGAATGAACTGCTCCTTACATGCTTGCATACAAATTCCCAAATTATTTGGTAAAATCTGACTTCACCTGAACCGTAGCTTTAAGATTCGCTATGGCGCTGAGATCCTGTAAAGATCAGTGGTGGCAACACGTTTCGTTTACTGTACTGTGCTTTTGTCACTTTCGCCAGCCCCCACAGTCCCCTCAACAGatatgcatatacatgcacatttgTTTATGCATAGATGTCTGTCTGTGGGCGTGTTTTTCTGTAATCTTTATCTTTTCGGGACTGAAGGTTGCTTTTTAGTTCcttaatatcaatatcaaacTATATACAAAATTTATGTGCCAAACGCAGTTCCTGTTAAGTCAGATTCATTCCAAAATCATCTTTGTACTGTAGGAAACCTTCCATGAAAATGGTATGAAGAAAATGTTTCACTGATAGTCCCTTGTAACTGGTGCCATGGAAATATTCaaacttgaaataaacattcaaaagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182662 lncRNA upstream 121564 1758294 ~ 1759869 (+) False G123622
TU182663 lncRNA upstream 121604 1758245 ~ 1759829 (+) True G123622
TU182598 lncRNA upstream 142301 1693116 ~ 1739132 (+) True G123576
TU182631 lncRNA upstream 262008 1616143 ~ 1619425 (+) True G123599
TU182613 lncRNA upstream 291146 1588754 ~ 1590287 (+) True G123587
TU182694 lncRNA downstream 12254 1919837 ~ 1920891 (+) True G123643
XR_006246962.1 lncRNA downstream 146937 2054520 ~ 2061225 (+) True LOC122323174
TU182978 lncRNA downstream 331330 2238913 ~ 2240259 (+) False LOC122363059
XR_006246969.1 lncRNA downstream 415006 2322589 ~ 2331573 (+) False LOC122323220
XR_006246970.1 lncRNA downstream 415006 2322589 ~ 2329684 (+) False LOC122323220
XM_043264157.1 mRNA upstream 66136 1802361 ~ 1815297 (+) True malt3
XM_043264156.1 mRNA upstream 92193 1778613 ~ 1789240 (+) True slc28a1
XM_043216693.1 mRNA upstream 124748 1755660 ~ 1756685 (+) True ch25hl1.1
XM_043216757.1 mRNA upstream 126535 1747275 ~ 1754898 (+) True si:dkey-24l11.2
XM_043216658.1 mRNA upstream 147017 1726239 ~ 1734416 (+) False pstpip1a
XM_043264101.1 mRNA downstream 107489 2015072 ~ 2020057 (+) True ankrd34c
XM_043264100.1 mRNA downstream 107489 2015072 ~ 2020057 (+) False ankrd34c
XM_043264425.1 mRNA downstream 115087 2022670 ~ 2034070 (+) True idh2
XM_043264685.1 mRNA downstream 187970 2095553 ~ 2155503 (+) False sema4ba
XM_043264686.1 mRNA downstream 187973 2095556 ~ 2155503 (+) False sema4ba
TU182587 other upstream 309502 1565426 ~ 1571931 (+) True G123568
XR_006253178.1 other upstream 826698 1045211 ~ 1054735 (+) True tmem123
XR_006253179.1 other upstream 833442 1045211 ~ 1047991 (+) False tmem123
XR_006253182.1 other upstream 1058256 814764 ~ 823177 (+) False LOC122362993
TU182087 other upstream 1772601 108369 ~ 108832 (+) True G123243
TU182722 other downstream 94203 2001786 ~ 2002290 (+) True G123664
TU183022 other downstream 394943 2302526 ~ 2305578 (+) False plin1
TU183320 other downstream 1604383 3511966 ~ 3554690 (+) True tmem170a
XR_006253139.1 other downstream 1812305 3719888 ~ 3743756 (+) False nrn1la
XR_006246974.1 other downstream 2833285 4740868 ~ 4740965 (+) True LOC122323235

Expression Profile