RNA id: XM_043216702.1


Basic Information

Item Value
RNA id XM_043216702.1
length 4244
RNA type mRNA
GC content 0.49
exon number 21
gene id capn12
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 841411 ~ 862016 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGATGCGCTGCTCCTACGAACTTCTTTCAGAAGTTCAGAAATTTCAGCACGGGCTGCGACAGCACTACCCCATCCGAAGAGATGTCCGAGTTAGGCTCCATTGACAATCCGGTGAAGTTCAATGATCAAGACTACGACGCCCTGCTGCAGAAGTGCCTCAAATCTGCGGCTCTGTTCTCTGACACGGTGTTCGGGGCGAACCAGAGCTCCCTCGGTACTCCAGCGGATCCTGATCCTAAAAAGGCAGTGAAGTGGCTGCGTCCGAAGGAAATCACAAGTAACGCTGTCTTTGTTGAGGGCACCATGGGCACCACCGATATCTGCCAGGGCCAGCTGGGTAACTGCTGGCTGTTGGCGGCCCTGTCCTGTCTCACCATGCATCCGCCTCTGTTTGTGAAAGTGGTTCCAGCTGGACAAAGCCTGAGTGAATCTTACGCTGGCATCTTTCGTTTTAGGtTCTGGCAGTATGGTGTGTGGGTGGAGGTGGTAGTGGATGACAGGCTGCCTGTGAGAGAGGGCCGTCTGCTTTTCAGCTACTCTCGCACCACCAACGAGTTCTGGAGCGCCCTGGTGGAGAAAGCTTATGCCAAGCTGATTGGTTCTTATGGCAGTCTGAAGGGGGGAATCATCTCAGAGGGAATGGAAGATTTTACTGGGGGCATTGCCTACTCCCTCCCCGTGTCTTCTCGGGCCCCTCGCATGCTCTGGAGGGCCGTCACCGCTGCCCTGGCTAGGAACAGCCTGCTCAGCTGCTTCATACATGCTGCAAATGTAAAGGAGATTGGCACTGTGACATCAGAGGGTCTTATCAAAGGTCATGCATATGCCATCACAGATACAGATAAGgtCCAGAAAGCGTCTGAAGAGGTCTTACTGCTGAGGCTGCGTAACCCCTGGGGGTTTGTGGAGTACTGTGGACCCTGGAGTGACAAgtGTAAAGACTGGGACGCTATAGATAACACCCAGAAGGCCAGACTTGAGTTGGTGAAAGTTGAAGATGGAGAATTCTGGATTGGAATAGAAGACTTTTGTCGGCTGTTTAATACCGTGGAAATGTGCAGCGTGAACCCGGATTCGATGTCAGGGGAGGCGAGTGAAGACACAGCCACCGCGTCCTGGACATTAAGCTCACATCAAGGAAACTGGGTCCCAATGTGTTCTGCAGGGGGCAGCCGACGATACCCCAGATCCTTTTGGAAAAACCCTCAGTTCCAGATGGTTCTGTCTGAGAAAGATGTGGATGATCACGATTATGGAGAAGATGAAGAAGGGGAGGAAGGAGATGGAGAAGATGATGAAGTAGGTGTTGTGGTGGCTCCTGTGAGCAAGACTGAGAAacagggagagaaaaagaagaagtgCACAGTACTGGTGGAGCTTCTCCAGAAATACAGGAGACAGAAAGATAAAGTCAACTTTCTCTACATCGCATTTCACATCTACAAGGTTCCCCCTGAGCTGCAGGACAAACCGGGATCTCTGGACCAGCAGTTCTTCTCCAACACCAGTCCAGTTGCCCGCTCTGGAAAGTACCGTAGCATTAGGAGCGTGTGGCGGAAGGTGCACCTAGAACCTGGCAGTTATGTCATCCTAGCCTCCACCTACAGGCCCAACCAGCAGGGGGAGTTCTTCCTCCGCGTTTACACCCAAACCGGCAACATACAGGGGTTCCAGGATTTCCCCTGCACCAACAACTACTCTGTGATGGTAATGTCAAAGCCAGTCTTACCTGAGGATCAGTTTAGAGTGCAGAAGTGGTTTGATGAAAAGGCTGGGTCGGATGACAGAGTGAATGCTGTGCAGTTCATGAACCTGGTGAACTCAGtgttggAAAAAGACTATGAACTTCCACTGGAGACCTGCAGACAGCTCATCTTTGGAGAAGATACTGGTGGCAGAGGCCGTCTGAGCAGAGCTCAAGCAGAGAAGCTGCTCACCTCCCTACGCAATCTGCAGTCTATCTTTTTCCAGTTTGATGAGGATTCGTCAGGAACCATGAGTCCGTTTGAGCTCATTTTGGCTTTGAATGCTGCAgGTGTGGAGTGTGACAATGTTGTGGTGCAGTTGTTGTGGGAGAGGTTCGGCGCTGGTGAACAATACCTGCCTTTCTATGGCTTTGTGTCTTGTGTTGCCAGACTGCAGGTGCTCTTTGATCTTTTCGAGTCGGAGACCAACCCAGAGGTGAAGGACAACGGCATCAACGCTTGGCTGCTCAAGCTGTTGGCTGTGTGAGCCTGTCCAGACCCGACACCTCAGCGGGACGGACCTGCTAGGCCAAGACTACTCTGACGTCATCCACCTGGGCCTACGTCTCCCACATCTCCCCCTCTTCTATCTCATTTGTGATCTTTCGGACCTTTGCCCTGCAGTTGCTTCCACCCACTCATCACTCCATCAGTTTGGGGTCTATGACCATGTAGGTCATTACTGCCTGGATACAAAATTTCATCCCCCTCGCTCCACCCTAACAcagcgtgtgcgtgtgtgtgtgtgtgtgtttgcgttcaTAATAATCccaacatttgaatattttaataggaatatttttcttgtaaatgaTCATTATAGCATCGTTAACTCGCTCTCTCGTCATCCCAAACCcaaatgactttatttcttttgtggAGCGCAAAAGAAGATGTTTTACGGGATGCCCAAGCTGCTCTTTTACCACgtgcaatgaaaatgaatagagACGGTTGTGATGGCCGTTCACTTTGATTGTTGGAGAGGCTTGGGCATTCTTCCAAACATCTTCCTCTGtgttacaaacaaaaaagaaagccGTATGCATTTgtcatgaatgtaaatgtgaccaatctatatttaataacaacTATATTTCTAGCACATTCGTCCATTTAATTAGCAGAGCTGtctattaatgttaatttagcGGGATTTAGTGCCGGAAAATATTGATTCGtgattaatcaaaatatcatGCAGTTAACTAAATGAAATTTTGACTCACTGATTGCTCTAATTATGAGTGACGCTTTATACAGTCATTgcagttttcatatattttgaacattatgtCTGCTTTCATATGCTTTTAATAACAGAAGTCGAGCGGTGCtgttaatgcatttaaagcaaGGGCCCGTTATTATGGTCATGCTTGTACCAAGGATCCTAATTGCATCTTTTTTCGTTCATACAGCATGAGTCGTACTTCCTGCTACTTTTCTCCCCTCTTAGGAACATTTATGTATCTCCGCttaatgtctttaaaagttGAGAACGTTTTATGCTTCCAAATATAAAAGCACAAGTCATAATCTTTCATCACGGGgcatttctatattaaattttttctgTGCGTATACCtacacctccacacacacacacacacacacacacacatattgttcGGGAGCGAGATAGTAGCTGTGGGTATTAAAAGCGATGTCTCAGCAGCCCTGCACGCACCGGCTCTATTCTTATCGCTCTGACGCCACGCACAGCGTCATCACGCCATCGCTCCCTCCTCCGCTACGCTCTCTCCCTGCATCCCTCCCTCCGGCTCTCTCTAGTAACTGTCTCATTCTCACAATCTGCTTCCTCCTCCTCGCGTACCTCGCGCTCGCTCGCTCACACATGCGCGTATGCTcgctcacacacattcatacgcTCTCGTCCTCTCTCCCGCTGCTCCTATTAATAGAAACCTTTGCTCACACAATGCTTCCTCCCTGCCGTAAGGTGACCGAACAGAGGTTGCCCCCAGCAACAGCCCAAGCGCCTCTGGAAAAGGGCTAGAAAAAGCAGGCACGCACGTCCGTCGTCGCTCTCTCAATCACTTCCTCTTCCGTAATTTTCCCGCTTGCATCTTGTACTTGTTACACCGTGATCCCTCAGCGTATTCGCTTCTCTAAAAGCTGCTCTTGACTCGGTTAtccctgtctgcctgcctcgcTCTCTCTCGTCTCTGTAAAGCGAGCCAGaaccattttccaaaaataccAGGGGAAAGCCATTCCCATTCATCTCGCCTGGCGAGCGATTTCCAGAAGTTTGCCATCTTTGCTTAAGGGCGCCTAGTTCGGCTACTTGTTTTTTCAAACCAATCGCTTGAGCCGCATTTGCCACGTGACTAATCGCTCTCGACCCGATTGGTTGATGGCGACGCAAGAATGTCCAAAACCTTAGAAGTTGGCATCAAAAATGTCCATTTCACGCTTATAAGAGCCTTCCGGAAAACATTATCTGTAATGAAATAAAGGGAATATACACACTA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182193 lncRNA upstream 311792 529398 ~ 529619 (+) True G123312
TU182176 lncRNA upstream 328779 511298 ~ 512632 (+) True G123301
TU182152 lncRNA upstream 365010 464104 ~ 476401 (+) True G123282
TU182403 lncRNA downstream 28754 890770 ~ 919977 (+) True G123422
TU182468 lncRNA downstream 161089 1023105 ~ 1051430 (+) True G123472
XR_006246948.1 lncRNA downstream 234447 1096463 ~ 1129331 (+) True LOC122323124
TU182487 lncRNA downstream 234447 1096463 ~ 1128705 (+) False LOC122323124
TU182490 lncRNA downstream 369750 1231766 ~ 1236921 (+) True G123491
XM_043216652.1 mRNA upstream 6061 824825 ~ 835350 (+) True znf296
XM_043264835.1 mRNA upstream 17736 814751 ~ 823675 (+) True LOC122362993
XM_043264834.1 mRNA upstream 17736 814764 ~ 823675 (+) False LOC122362993
XM_043264024.1 mRNA upstream 28016 807366 ~ 813395 (+) True siae
XM_043264025.1 mRNA upstream 28016 807366 ~ 813395 (+) False siae
XM_043264965.1 mRNA downstream 12671 874687 ~ 880293 (+) True fosb
XM_043264966.1 mRNA downstream 12671 874687 ~ 880293 (+) False fosb
XM_043264967.1 mRNA downstream 12671 874687 ~ 880293 (+) False fosb
XM_043216731.1 mRNA downstream 20932 882948 ~ 888956 (+) True c18h19orf47
XM_043263906.1 mRNA downstream 29597 891613 ~ 914612 (+) True ttc9b
XR_006253182.1 other upstream 18234 814764 ~ 823177 (+) False LOC122362993
TU182087 other upstream 732579 108369 ~ 108832 (+) True G123243
XR_006253178.1 other downstream 183195 1045211 ~ 1054735 (+) True tmem123
XR_006253179.1 other downstream 183195 1045211 ~ 1047991 (+) False tmem123
TU182587 other downstream 703410 1565426 ~ 1571931 (+) True G123568
TU182722 other downstream 1139770 2001786 ~ 2002290 (+) True G123664
TU183022 other downstream 1440510 2302526 ~ 2305578 (+) False plin1

Expression Profile