RNA id: XM_043216776.1


Basic Information

Item Value
RNA id XM_043216776.1
length 4275
RNA type mRNA
GC content 0.41
exon number 6
gene id LOC122323116
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 5653706 ~ 5659654 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGATGCTACTCTGTATCGCCAGGTTTTGTAATGTTGTATGCAGAGTTAATTTAGGCACCTGCATCCTCCAAGCTGACCCGCAGCCCCCTGCACTTTTCAAGGATGGAGATTTTGTCATTGGAGGGGCTTTCACCATTCATTATTATCTGAAGACAGAGAAGCATATCTACATTAGTCGGCCACGACCACTTGAGTGCAGTGGCAGCATGGACTTCAGAGAGTTGCGCTTTGCTCGCGCCTTGCAATTCGCCATCCAAGAGATCAACAACAGCTCCGATCTTTTACCAGGCATCACTTTAGGGTACCATATATACGACTCGTGTGGCTCTGTGCCAATGGCGATTAAAGTAGCATTACAGCTTGCCAACGGACTAGATCTCGTATTTAACGACACTGATTCCTGTGTAAAATCTGCTGCAGTTCCCGCACTTGTTGGAGAATCTGGTTCCACACCGTCTATAAGCATGTCAAGATTTTTTGGTCTCTTTGGAATTCCACAGGTGAGTCATTACGCGACGTGCGCGTGTCTCAGTGACAAGCGGCAGCATCCTACTTTCTTCAGGACCATCCCCAGCGACCACCATCAAGCGGCAGCACTGGCACGGATGGTCAAGCACTTCGGATGGACGTGGATCGGGGCTGTGCGCAGTGATTCAGACTATGGGAACAATGGCATGGCATCATTTCTGAAAGCTGCTGAGGAGGAAGGGATCTGTGTGGAGTATTCTGAGGCCTACTACAGGACCCAGCCGCGCAGCAAACTGAAAAGAGTGGCGGATGTCATTCGCAGATCAACGGCTCGTGTGATAGTTGCATTCCTGGCTTCAGGTGATATGAGACTTCTGTTAGAAGAGTTGAGCCAGCAGCCTCCTCCTCCGATGCAGTGGATTGGCAGCGAAGCGTGGGTTACCGATCCAGAAATGCTGCGTTTTAATTTGTGTATCGGTGTAGTGGGTTTTGCAATCCCGCGGTCTGTTATCCCGGGTCTTCGTCAATTTCTACTCGACCTGTCTCCAGAACAAGCGCTAAAATTCCCCCTGCTGACAGAATTCTGGGAAAGCTCATTCAGCTGTAGTCTAAAACAGCACACAGGTTCTTCTACTGATATGCCAGCATGTGATGGGACAGAAAACCTGCGCGCTTTACAGAACCCGTATACAGACACGTCCCAGTTGCGCGTCACAAATATGGTGTACAAAGCGACATATGCTATAGCTCATGCCCTCCATGCCATTGTCTGTAAGGAAAATAGATGTGACAAAAGCATCAAAGTTGATCCCCATAAGGTTTTTGATCAACTTAAACAGGTGAActtcactaaaaataattatccTGTTTCATTTGACTCCAATGGAGATGCTGTGGCCGCATATGAACTTGTGAACTGGCAGCTTCATGGAGAAGGTTCAGTTGATTTTGTGACAGTGGGTCAATATGATGCATCCAAGCCTAAAGGCCAAGAATTCAGTCTGAGCAGAGCTATCATTTGGTATGACGGCAGTGAAAAGGtgcctgtgtctgtgtgcagtgAGAGCTGTCCTCCAGGTACAAGGAAGGCTGCACAGAAAGGAAGACCTGTCTGTTGTTATGACTGTATTAACTGTGCAGAAGGAGAGATCAGCAATGAGACAGATTCTTTAAATTGTTACAGATGCCATCCTGAGTATTGGCCCAATGATGAGAAGGACAAGTGTCTTCCTAAACCAGTGGAGTTTCTCTCCTGGGATGAGATCCTTGGGATTATACTGGCTGCTTTCTCTGTTGCTGGCTCTTTAGTGGCTTTGAGCATAACTTTAGTGTTCTACAAAAACAGGGCCTCTCCGATAGTAAAAGCCAACAACTCAGAGCTGAGCTTCCTGCTTCTCTTCTCATTGTCTCTGTGTTTCCTTTGTTCTCTTACTTTCATTGGTCGACCCACTGAGTGGTCCTGTATGTTGCGCCACACAGCATTTGGGATAAtttttgttctctgtatctCCTGTGTTCTCGGGAAAACTATAGTGGTGTTAATGGCCTTCAAAGCTACACTTCCAGGAAATAAtgtcatgaaatggtttgggcCTCCTCAACAGAGACTCAGTGTTTTGGGCTTCACTCTTGTACAGGTACTTATATGTGTGCTTTGGTTAACAATATCTCCACCTTTTCCTTATAACAATATGCAACACTACAAAGAAAAGATCATTCTAGAATGCAGTTTAGGATCAGCTGTAGGTTTCTGGGCTGTTCTGGGTTATATTGGCCTCCTGGCAttcctttgctttgttttagcTTTTCTTGCCCGAAAGTTGCCTGATAACTTCAATGAAGCTAAGTTCATCACATTCAGTATGCTCATATTCTGTGCTGTATGGATCACTTTTATTCCAGCTTATGTCAGCTCTCCAGGGAAATTTACTGTAGCTGTGGagatttttgctattttagcttcaagcTTTGGTCTGATTCTCTGCATTTTTGCTCCTAagtgtttcattattttatttaggccAGAACAGAATACCAAAAAACACTTAATGGGTAAAGTACCATCAAAAGCCCTCTGAGTCCTTAAACAAAAGCACTGCAAAGGTGCGCACAGTAATTAACAGTggacattatatattttgtgaatttgaagcatattatacacacacacacacacacatatatatatgtatattccaAAGTTGCCATATTTCTCACAGTGAGTGTCATGGCATGACCAAAtacactatatttttaaaaataatactcaTTTGTGTCACAGAATGTAGTTTTATGAGTTTCTTTTAGGCAGGAATGTACTTGGTTAGACCTCAAATATGCAGTttgttaataaatactgtataacgTCTATTTGAAAATTTGGTTTCacgttttttaatgttacaggGCATCGGTGGGCATTCAGTGCTCATACACCGACCCATCGGCCTGATCTTCTGGAATAGTGGTTAAATCTAACAGGTTTTTGGTCTTTTATTTGTTCCAGAGCAAATGGTTTTGGCAGATAGCAGAAACTCTTCACGTTATAACTGTAACTTCAATGCAGTATATAAGATGGCTGTCTTTTGTACTTTTGACCGAATTGCCTAGGAACATTTATGATAGCTGTTGTCATTGTTCATTACAtcttattgtttaataaataatattttatataaataataatgttactgGTTGAGGAATGGTGTGCATTTGTAGATATACATCAATTAGTAGTCCATTAATATCCATAAAAAACTGCCACGCAGGTTGAAACAATGCGAGAATGTGCTACCACAACTGGCAAGAGCAGCTCCGTGGTGTTTAGCGTCCCGCCACCAGCAGATGCACGCTAAAGAAGCAAAGCTTCAGCAAAAGCAATTATTATGAATTTGTCTGAGAAAACGGTAGAGAGAGATTcgatttatttactaaaaaaataggTTTTCTGAGTCTGCATCACTGAAGTTGCCGATCCTGTCTCATGCCTTCAGGGAAAAGTGCATCTTTAcagattatgattatgattattttgtTAAGTAGTAATTTAAAGCTTTCTATAGATATTTGGCAGAATGCGCATGATgttagttttctttattttataaaagtgcaCCGTTTTGCTGATATTATGAGCGCACGCAAATAAAAGTATACCCTTTACGGTTCCGAACGATGTATCTCTCTTAAATGGTGTTACTAACAGCGATATTTTTCCAGCAACGAGTAATCCTCGCCATTAAAACGCCATTACTTTTCTCACAATAAAATGCAGCCTTACTGTAATCTATTATAGGTTCAGTTCATCTTAATAGATGTGCAGTGTGACGTACCTATATTTGACATACCAAAACTCTAATGTGCCATCGATGCTTTGATTCACACacgcaataaaaaaagatgcagaGCTAGAGAGTCCTGCATAAAACGCAGAATGTAAACAATATTCTTTGCTGTATTTTCCAGTCAAAAAAGCGTTCCTTTGGAATTCTTCAGAAATAGGCcttttatttacatagaaaaagtcTTAGATCTTAGTTCAGCTCATGTAAAACGTGTTGCATTTAGAATTTCGGTCAGTGTATATAttgcaaattatgtttttaattctgtttgCATGTACGTCAACTTGGATATCTGGTCAATAAAAGGCTTTTAATGATGTAAACATGGTCAATCCATTGTTAGTTGTGGTTggacacaaaaataaaatacaaatattttataatttaatttggtAAACAGTACTAGTGGCTCCTATATATTTACAAACTACGTAACAATCATAATCCAACAGTATGATGAAc

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184052 lncRNA upstream 28729 5623906 ~ 5624977 (+) False LOC122323196
TU184043 lncRNA upstream 158062 5495189 ~ 5495644 (+) False LOC122363125
TU184042 lncRNA upstream 159573 5492336 ~ 5494133 (+) False LOC122363125
TU184034 lncRNA upstream 298726 5354713 ~ 5354980 (+) True G124595
TU183978 lncRNA upstream 595868 5056750 ~ 5057838 (+) True G124547
TU184061 lncRNA downstream 252 5659906 ~ 5660233 (+) True G124622
TU184121 lncRNA downstream 361587 6021241 ~ 6021636 (+) True G124672
TU184122 lncRNA downstream 364005 6023659 ~ 6023991 (+) True G124673
TU184126 lncRNA downstream 368869 6028523 ~ 6028845 (+) False LOC122362599
TU184162 lncRNA downstream 567827 6227481 ~ 6230584 (+) True G124703
XM_043265098.1 mRNA upstream 8651 5641407 ~ 5645055 (+) True LOC122363140
XM_043265088.1 mRNA upstream 15433 5634794 ~ 5638273 (+) True LOC122363134
XM_043216882.1 mRNA upstream 23905 5625938 ~ 5629801 (+) True LOC122323190
XM_043216887.1 mRNA upstream 28735 5619470 ~ 5624971 (+) True LOC122323196
XM_043216881.1 mRNA upstream 42798 5607481 ~ 5610908 (+) True LOC122323189
XM_043216774.1 mRNA downstream 971 5660625 ~ 5674945 (+) True LOC122323115
XM_043216772.1 mRNA downstream 4024 5663678 ~ 5674945 (+) False LOC122323115
XM_043216775.1 mRNA downstream 4024 5663678 ~ 5674945 (+) False LOC122323115
XM_043265113.1 mRNA downstream 16229 5675883 ~ 5679114 (+) True LOC122363148
XM_043265146.1 mRNA downstream 26016 5685670 ~ 5688983 (+) True LOC122363168
TU184051 other upstream 24053 5623453 ~ 5629653 (+) True G124612
TU184037 other upstream 258394 5394895 ~ 5395312 (+) True G124598
TU184019 other upstream 423760 5228563 ~ 5229946 (+) True G124580
TU184016 other upstream 427649 5225808 ~ 5226057 (+) True G124577
TU183987 other upstream 513035 5139490 ~ 5140671 (+) True G124553
TU184110 other downstream 316556 5976210 ~ 5979282 (+) True G124661
TU184178 other downstream 631837 6291491 ~ 6291925 (+) True G124707
TU184202 other downstream 879593 6539247 ~ 6540907 (+) True G124727
TU184395 other downstream 1366664 7026318 ~ 7027135 (+) True G124881
TU184430 other downstream 1512972 7172626 ~ 7173020 (+) True G124914

Expression Profile