RNA id: XR_006246956.1


Basic Information

Item Value
RNA id XR_006246956.1
length 2687
RNA type transcript
GC content 0.53
exon number 26
gene id wdr59
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 20003004 ~ 20015706 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGTTCTGGTGGTGGGTGAAGATGGCGGCCCGCTGGAGCAGTGAGAATGTGGTGGTGGAGTTCCGAGATGCACAGGCTACTGCGATGTCAGTGGACTGTCTCGGGCAGCACGCAGTTCTCTCTGGGAGGCGATTCTTATATGTTGTTAATTTGGAGACGCCGTCCGAGGCTCCACGCAAAATCAGCCGCCAGAGCAAATGGGATGTCGGGACAGTCCAGTGGAATCCGCACAAAACCGAGGCCCATTTATTTGCAGCATCTAGTAACCAGCGTGTTGACCTGTACGCTTGGCGTGATGGAGCCGGAGAACCACATACGTCTTTGCAAGGCCACACGCGTGTTATAAGTGATTTGGACTGGTCATGGTTTGAACCGGAGTTTCTTGTCACAAGTTCTGTGGATACTTACATCTACATATGGGACACAAGggaCACTCGAAAACCAACCGTTGCTCTGTCTGCCGTGGCTGGAGCCTCTCAGGTGAAGTGGAACAGACGGAATCACTATTGTTTGGCGTCAAGTCATGATGGTGATGTCAGAATCTGGGACAAGAGGAAACCCAACACTGCTGTGGAGTATGTAGCCGCCCATCTGTCAAAGATACATGGTCTGGACTGGCACCCGGATAACGAGTACATTCTGGCTACTTCCAGTCAGGACAACTCTGTTCGGTTCTGGGACTACAGACAACCCCGGAAGTACCTGGATATCTTGTCATGTCAGGTGCCTGTGTGGAAAGCCAGATACACGCCCTTCTCTAACGGCCTGGTTACGGTGATGGTTCCTCAGCTACGGCGAGAGAACAGCCTCCTGCTGTGGAGCACGCTGGAACTCAACAGTCCTGTTCATGCGTTCGTGGGCCACGATGATGTTGTGCTTGAGTTTCAGTGGAGGCCGCAGAAAGAAGGTTCCAAAGACTGCCAGCTGGTCACGTGGTCCAGAGATCAAACCCTGAGGATATGGAGAGTAGATCCTCAGCTTCAGAAGCTGTGCTGTGCCAATGACATTGTGGACGAGTTGATGGAGGGCTTGACTCTCaccacagagacagagaaaactATGAGGACGCAAGACTCTGAACCTCCGCTCAGCCCTGGATTCACAGCGGACAACTCACAAGATCAGTTTGATGGCCCTCAGTCTGGTGGCAAGAATGACGTACCAGGTTTGCCTCAGACTCTGCAGCAAGAGTTTTCTCTAGTCAACTTACAGATTCGCAACGTCAACGTGGAGATGGATGCTGTGAACCGCAGTTGCTTTGTGTCGGCCGACTGCGGAGCCAATCGCGTTCGTCTCGTGGTGAAGTTCCCTGCCCAGTATCCCAACAATGCAGCTCCGTCTTTCCAGTTCGTCTCTCCCACAAATATCTCGTCTTCCACGAAGACTAAGATACAGAAGATCCTGACAGATACGTCGCTTCAGAAGGTAAAGAGAAACCAGAACTGCTTAGAGCCGTGTGTCCGACAGCTGGTGTCTTGCTTGGAGTCAGATGGAGTCATGGAGGACGGTACGAACCCTTATGTGCTCACCAACCCGGTAACTCCTGCACTTCCTGCTTTCCCTCGAGTAACCAACACTTACGGCTCGTACCAGGACTCTAACATCCCCTTCCCACGCACCTCAGGGGCACGCTTCTGCGGGACAGGTTCCTTGGTTTATTTTACTCGACCCATAACTATGCATCGTACGGCCCCTCCGACTGAACCTACTCCCAGGTCTCTGTCAGCTCTTTCTGCGTATCACAGCGGGGTGATGACCCCCATGAAAATGCGAACGGAGTCTCAGACCACCCTGAGGTTGTACAGCGGCAGCCCAACACGCACAGACAAAGACCAAGTGTCCATATCGTCCTTTTACTACAAAGAACGGAAGCTCCCTCTGTCTGCTCCCCGCCGCTGGTCTGTGCAGACTATTCATGACTGTCCGAAATCGCGCCGCTGGAAAGGCAAGCGAGAAGGAGGAGACTACAGCAGCAGACCCATCAAACTGGCCGGCAAAGTCATCATCCAGGAAATCTCGGGTCTGCTCCCTGTGCACAAAGCCCTCGGAGAGACATACGTGCTAAATGTTAATGACATACAGGACACGTGTCAGAAGAATGGGGCGGCGGCCTTAGCAATGGGCCGCAGGGATTTAGCAAAAGTTTGGGCGCTTGCCTCGGCAGCCACGAATCTTGACCTCAGTCCCGACCCTGACCCTGACGCTGGAACTCCCTGGGCCAAACACCCATTCGGGCGGCATCTGCTGGAGACGTTACTCGAACACTACAGTCAGATGAGTGATGTTCAGAGTCTGGCCATGCTGTGCAGTGTGTTCAGAGGTCACGGCAGTCCTCAGGAATATTTCACTCTATACGGACATCAGCAACCTCGAGCGGCGATCTTCACGTCACACCACTCCCGCTACCTTAATACCTGTGACGTGCTTCTGTgcttatttgtttgcttttgcatTACTGCTGCTTTTTTAGCCCAGCTTCACCTCGAGCTCGGTCACCTCCGGATCATGTTCAAGTACCTCAGACTCTGCAAACACTCCGTGGACCATGGTTGGACGTGAATCAGAGCATGCTCCTCCCTGGGGAGAATCGTCTCCGGATGACTATCGCTATGCAAACCAGATATACACTGACCCCCGAGAACGAGAAAAAGAACAACACGACATGAACAAAAGATTACTGGACCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188509 lncRNA upstream 11368 19985741 ~ 19991636 (+) True G127663
TU188470 lncRNA upstream 78202 19781765 ~ 19924802 (+) True G127637
TU188465 lncRNA upstream 376483 19626153 ~ 19626521 (+) True G127632
TU188463 lncRNA upstream 379722 19623013 ~ 19623282 (+) True G127630
TU188450 lncRNA upstream 426845 19575889 ~ 19576159 (+) True G127617
TU188679 lncRNA downstream 188962 20202748 ~ 20211417 (+) True G127766
TU188681 lncRNA downstream 188962 20202748 ~ 20215231 (+) False G127766
XR_006253191.1 lncRNA downstream 207518 20221304 ~ 20224584 (+) True LOC122363139
TU188698 lncRNA downstream 242926 20256712 ~ 20281295 (+) True G127780
TU188708 lncRNA downstream 311544 20325330 ~ 20383758 (+) True G127785
XM_043216832.1 mRNA upstream 3261 19994589 ~ 19999743 (+) True cog8
XM_043216838.1 mRNA upstream 14190 19981461 ~ 19988814 (+) True zdhhc7
XM_043216817.1 mRNA upstream 48805 19945146 ~ 19954199 (+) True LOC122323149
XM_043264324.1 mRNA upstream 62191 19938028 ~ 19940813 (+) True LOC122362767
XM_043216825.1 mRNA upstream 67245 19928226 ~ 19935759 (+) True LOC122323153
XM_043216819.1 mRNA downstream 3588 20017374 ~ 20055307 (+) True glg1b
XM_043216814.1 mRNA downstream 53892 20067678 ~ 20093601 (+) True zfhx3a
XM_043216823.1 mRNA downstream 87843 20101629 ~ 20118432 (+) True si:ch1073-390k14.1
XM_043216824.1 mRNA downstream 97452 20111238 ~ 20118432 (+) False si:ch1073-390k14.1
XM_043216815.1 mRNA downstream 107870 20121656 ~ 20154452 (+) True otogl
TU188266 other upstream 1161469 18777768 ~ 18841535 (+) False G127500
TU188268 other upstream 1220845 18777768 ~ 18782159 (+) True G127500
TU188207 other upstream 1441394 18560366 ~ 18561610 (+) False G127456
TU188208 other upstream 1441394 18560366 ~ 18561610 (+) False G127456
TU187968 other upstream 1862751 18138535 ~ 18140253 (+) True G127292
TU188630 other downstream 72909 20086695 ~ 20087581 (+) False zfhx3a
TU188799 other downstream 534041 20547827 ~ 20549318 (+) False glipr1b
XR_006246928.1 other downstream 537362 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU189467 other downstream 2387188 22400974 ~ 22406982 (+) True LOC122363143
TU189495 other downstream 2421020 22434806 ~ 22438679 (+) True G128367

Expression Profile