RNA id: XM_043216883.1


Basic Information

Item Value
RNA id XM_043216883.1
length 2580
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC122323191
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 5601441 ~ 5604997 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGCAGGCATTAGAGAGCATGACTGTCCTGCTCCCATGGCTTCTGATTCATCATCTCAGTACACTCACTCCTGGATATGCTTCAGAATGCATGCTGCAAAACAGCTTTGAGCCAGGCCTAATGGCAAATGGAGATTATATAATAGGTGGTATTTTTCCATTGCACTACAATCAAGAAATGCCAGACCTTAACTGTACTTACAAACCAGGGCCAGTCAAATGTAATGGATTTGATCCGAGAGCTTTCCGCTGGGCTCTTACTATGAAACTTGCTGTGGAGGAAATAAACAAGCGAGCCGATCTCCTGCCTAACTACAGTCTGGGTTACAAAATCTTTGACTCGTGTGCTTACCCTCTGACAGGGCAGAGATCAGCAGTAGCTGTTATAAATGGgaaaaatgaggaaaatagTCCTATGTGTGAAGGTGCTGGTCCACTGCTTGCTATCATCGGAGAATCTGGGTCAGCTCAGTCTATTGTAGTTTCAAGAATTTTGAGGCCTTTTGGGATACCAATGATCAGTTATTTTTCATCCTGTGCCTGTTTGAGTGACAGGCGAGAATTCCCCACATTCTTCAGGGTCATCCCGAGTGATTCCTATCAAGTAAAGGCCATTGCAAAACTCCTGCTGCGTTTTAAGTGGACCTGGGTAGGAGTGGTACGAGGAGATCACGAGTACGGCCGCTTTGCTCTTCAGGGCTTACTGAAGGAGCTGGAGGGTACAGGAATCTGTGTTGCTTACCAGGAGATGATTCCTCTCTTATACGAGCGTCAAAGAGCGCTGGAAATCATTCGCGTCATGAACCATTCCACTGCTCGGGTGGTAGTAGTGTTCTCAGCTGAAGGGGAGCTTACGCCCTTCTTGAAAGACTACATGGAACAGAATGTCACTGGGATACAGTGGATTGCTAGTGAGGCATGGGTTACAGCCTCTGTGTTCACAGGAAGTGAATATTACCCTTTCTTAGGTGGGACTATAGGATTTGGCATACGACAGGGCCAAATCCCTGGATTAAGAGAATATCTCTCAACAGTCAACCCAGAAAGATACCCCTCAAATCCTCTGGTTCATGAGCTCTGGGGGGCTTTATATGGCTGCTCCCCCTCCATTTACAGCTTGAATAGTCATCTGCCCTCCTGTACAGGGAAGGAGACTGTTAGGGTGCAGCACTCTGCCTATTTTAACACTTCCAGCCCCCGCATTTcttataatgtttataaaggAGTGTATGCAATTGCTTATTCCCTGCATAATCTTATTCACTGTACACCCGGAAAAGGGCCATTCAGCAACTCCACATGTGCAAACTTGCATAATGTCTACCCATGGCAGTTACAACAGTATCTCCAAGAGGTGTCATTCACTATATCAGGAGAGACAGTGAAGTTTGACACGAAAGGCGATTCTATTCCATCTTATGACCTTATAAACTGGCAGAGGGGCTCAGCTGGAAATATTGAGTTTGTTAATGTGGGCATGTTTGACGGTGCACAAGAATCTGGCCAAGAACTGGTCATCCAGGAGAAGAATATCATGTGGCCCGGCCATCAGACTGAGGTGCTGGTGTCTGTGTGCAGCAACAGCTGTGCTCCAGGATTCAGGAAAGCTGTCCGGCGTGGTCAGCCTTTGTGCTGCTTTGACTGTGTACCATGTGACAGTGGCAAAATCAGTAATAAGACAGATTCAGTAGACTGTATGGCCTGTTCTGAAGACTACTGGTCTAATGCTGATGGAACAGTGTGTATTCCAAAAGTGGTTGAATTCCTGTCTTATGATGCAATGGGATTAACTTTAACAGTAATAGCTTTAGTTGGGGCGTGCCTAACTTTAGCTGTATTTGCTGTATTTCTCTATTACAGAAACACCCCTGTAGTACGCATAAATAATTCAGAACTCAGTTTTTTCATCTTGTTATCACTgactctgtgttttctgtgcgCTTTGGTGTTTATTGGGGAACCTACGTCCTGGTCCTGCATGCTGCGACACACTGCTTTCAGCATCACTTTCTCGCTCTGCATCTCCTGCATCCTTGGCAAGACTTTAGTGGTGTTGGCGGCTTTTACAGCTACCCGACCTGGAAACAATATAATGAAATGGTTGGGTCCCACACAGCAAAGAATAATTATCTTTTGTTGCACTCTGGTCCAGGTGATCATATGCACTGCCTGGCTTGTAGCATCCCCTCCGTTCCCTTATAGAAACACTAAATATCAACAGTCCAAGATCATCCTGGATTGCAGCGTGGGCTCTGATCTGGCCTTCTGGTGTGTGCTGGGATATATAGGCCTTTTGGCCTGTGTCTGCTTTTTTCTGGCTTTTCTGGCCCGGAAGTTACCGGGCAATTTTAATGAGGCCAAATACATCACCTTCAGCATGCTTATATTTTGTGCAGTGTGGCTGGCATTTGTTCCTGCATATGTCAGTTCACCTGGTAAATTTACAACTGCTGTGGagatttttgctattttagcTTCTAGTTTTGGTCTTCTCTTTTGCTTGTTTACCCCCAaggtttatataattttaataaagcctCAGAAAAACACCAAACAACATCTAATGGGAAAagacaaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184043 lncRNA upstream 105797 5495189 ~ 5495644 (+) False LOC122363125
TU184042 lncRNA upstream 107308 5492336 ~ 5494133 (+) False LOC122363125
TU184034 lncRNA upstream 246461 5354713 ~ 5354980 (+) True G124595
TU183973 lncRNA upstream 417904 5011405 ~ 5183537 (+) True G124544
TU184052 lncRNA downstream 18909 5623906 ~ 5624977 (+) False LOC122323196
TU184061 lncRNA downstream 54909 5659906 ~ 5660233 (+) True G124622
TU184121 lncRNA downstream 416244 6021241 ~ 6021636 (+) True G124672
TU184122 lncRNA downstream 418662 6023659 ~ 6023991 (+) True G124673
TU184126 lncRNA downstream 423526 6028523 ~ 6028845 (+) False LOC122362599
XM_043216885.1 mRNA upstream 380 5597909 ~ 5601061 (+) True LOC122323193
XM_043216884.1 mRNA upstream 13435 5584604 ~ 5588006 (+) True LOC122323192
XM_043216613.1 mRNA upstream 29272 5567174 ~ 5572169 (+) True LOC122323002
XM_043216609.1 mRNA upstream 40530 5557451 ~ 5560911 (+) True LOC122322998
XM_043216509.1 mRNA upstream 55019 5542929 ~ 5546422 (+) True LOC122322911
XM_043216881.1 mRNA downstream 2484 5607481 ~ 5610908 (+) True LOC122323189
XM_043216887.1 mRNA downstream 14473 5619470 ~ 5624971 (+) True LOC122323196
XM_043216882.1 mRNA downstream 20941 5625938 ~ 5629801 (+) True LOC122323190
XM_043265088.1 mRNA downstream 29797 5634794 ~ 5638273 (+) True LOC122363134
XM_043265098.1 mRNA downstream 36410 5641407 ~ 5645055 (+) True LOC122363140
TU184037 other upstream 206129 5394895 ~ 5395312 (+) True G124598
TU184019 other upstream 371495 5228563 ~ 5229946 (+) True G124580
TU184016 other upstream 375384 5225808 ~ 5226057 (+) True G124577
TU183987 other upstream 460770 5139490 ~ 5140671 (+) True G124553
TU183981 other upstream 490808 5071645 ~ 5110633 (+) True G124548
TU184051 other downstream 18456 5623453 ~ 5629653 (+) True G124612
TU184110 other downstream 371213 5976210 ~ 5979282 (+) True G124661
TU184178 other downstream 686494 6291491 ~ 6291925 (+) True G124707
TU184202 other downstream 934250 6539247 ~ 6540907 (+) True G124727
TU184395 other downstream 1421321 7026318 ~ 7027135 (+) True G124881

Expression Profile