RNA id: XM_043216890.1


Basic Information

Item Value
RNA id XM_043216890.1
length 2607
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC122323199
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 5939951 ~ 5943398 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTGGAACACTCTGTATATTTTTCTATACCTGTCATTTAACTTTATCTCTGCATATTCAATCCTCAAATCAGATACATGTCAGCTCCAGGGACGCTTCAAGTTGAATGGAATGTACCAGGATGGAGATTTTATACTTGGAGGCCTGTTTCATGTTCACTTTTTCACAGTCTTTCCAGAACTGACCTTCAGAACGGTGCCAGAACCACCATACTGTGAAAAATTCAATATAGAGATCTTCCAGCAGGCACAGACAATGGCTTTTGCAGTAAATGAGATCAATAAGAATTCAAACTTGCTGCCTAACATCACTCTTGGTTACCATCTTTATGACAACTGTGTGAGACTAGGAATAGCGTTCCGGGCTGCTATATCCCTGGCTACTGGAACAGAGGAGTACTTCTCCAACCTAAACTGCACTGGCCCTCCTCCAGTGATTGGGATTGTGGGAGATCCAAGTTCAACTCCTTCCATCGCAATTTCCAATGTTCTGGGGCTGTTTCGAGTACCTATAGTTAGTCACTACGCCACCTGCTCCTGTTTGAGCGACAGGAAAAAGTACCCCTCTTTCTTCAGAACAATCCCCAGTGATGCCTTCCAGGTCCGGGCTATGGTTCAGATCTTGAGACATTTTGGATGGACCTGGGTTGGTCTTATATACAGTGATGATGACTATGGCATCTACGCTGCTCAGTTATTTCGACAAGAAATGCAGCTGTTTGGATATTGTGTTGCTTTTTCTGAAATCCTTCCCCATGATAATAACCACAAAGACATTCAATTTATAACAGGAGTGATTCAGGCCTCTACAGCTAGGGTGGTGGTTGTTTTTTCCACTTCATCCTTTCTAATACCTTTGATGGAGGAGGTGGTGTTACAGAACATAACAGGCAGACAGTGGATTGCTAGTGAAGCTTGGACCACTTCACCTGTATACCACACTCCACGTTTCCTACCAACTCTGGGGGGCACACTGGGCATTGCTATCAGACGTGGAGAGATTGAAGGGTTACGTGAGTTTCTTCTACGTCTCCATCCCAGTAATgatcaaaaaaacaatatagtgAGAATTTTCTGGGAAAACATGTTCAGGTGTAGTTTTGAAAAAGGGGGCATAGTGATAGATGGAGAGGAAGTGAAAAAGGTGTGTACAGGACAGGAGGATCTGAGCATCACAGAATCACCATACACTGATGTTTCTGGGCTGAGAGCAGCATATAATGTCTACAAGGCAGTTTATGCACTGGCACATGCACTTCATGACCTGATGCAGTGTGAGGAGGGGAGAGGACCATTCAGTGGGAACAGATGTGCTGATAAAACCAACCTTAAACCTTGGCAGCTGGTTCACTACCTACAGAAAGTAAACTTCACCACAGGCTTTGGGGATCACGtttcatttgataaaaatggAGATGCTCTGCCCATCTATGATGTACTGAACTGGCAGCCGAGCTCTGATGGGTCAATAAGGATTCACGCAGTTGGTGTGGTGAATGAAGGAGCGAAAACAGAGATGGTGCTCAGACTGGATGAGGATGCAATATACTGGAACTTTAAGACCAAGAAACCCCCAAGGTCTGTGTGCAGTGAGAACTGTCCCCCAGGAACCAGACAAGCCAGGAAGAAGGGCCTCCCTGTCTGCTGTTTTGACTGCCTGCCATGCAGAGATGGAGAGATTTCTAATGCAACAAATGCTATTGATTGCACAATCTGTCCAGATGAGTTCTGGTCCAACTCAGATAAGGACCAGTGTGTCCCGAAAGAAGTAGAGTTTCTATCCTATGAGGATCCACTGGGCATCTCTCTGACCACTGCCTCTTTGCTTGGCACCTGCATCTGTGTTCTTGTGATGATCATCTTTGCTCTTCACCGTAACACTCCTATAGTACGAGCCAACAATTCAGAGCTCAGCTTCCTTCTGCTGGTGTCActtaaactgtgttttctgtgtgtgctgCTGTTCATTGGCCAGCCACAGTTGTGGACATGTCAGTTAAGACATGCTGTGTTTGGTATAAGTTTTGTCCTGTGCATCTCCAGCATCCTGGTCAAGACTATGGTAGTAATAGCTGTGTTCAAGTCATCTCGACCAGAGGGTAAAGGGGCAATGAAATGGTTTGGAGCAGTTCAACAGAGATGCACAGTTCTGGTCCTAACAGCACTTCAGGTTGTGATATGTGCAGTCTGGCTATCAACTGCCTCTCCAACACCACATAAAAACAGCCAGTATACTCGCTCTAAAATAGTATATGAATGTGCTATAGGATCAGTTGCTGGTTTTTCTTTGCTTCTGGGATACATTGGACTACTGGCAGCAGTAAGCTTCCTGTTAGCCTTCCTGGCAAGAAATCTTCCAGataattttaatgaagcaaAGTTCATCACTTTTAGTATGTTGATCTTCTGTGCTGTATGGATTGCATTTGTTCCAGCATATGTGAGTTCTCCAGGGAAATATGCAGTTGCTGTGGAGATATTTGCCATTCTAGCATCTAGTTTTGGATTACTGGTGGCCATTTTTGCCCCAAAGTGCTACATCATTCTTTTACATCCAGAGAGAAATACTAAAAATGCCATCATGggaagagaaacacaaaataagtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184061 lncRNA upstream 279718 5659906 ~ 5660233 (+) True G124622
TU184052 lncRNA upstream 314974 5623906 ~ 5624977 (+) False LOC122323196
TU184043 lncRNA upstream 444307 5495189 ~ 5495644 (+) False LOC122363125
TU184042 lncRNA upstream 445818 5492336 ~ 5494133 (+) False LOC122363125
TU184034 lncRNA upstream 584971 5354713 ~ 5354980 (+) True G124595
TU184121 lncRNA downstream 77843 6021241 ~ 6021636 (+) True G124672
TU184122 lncRNA downstream 80261 6023659 ~ 6023991 (+) True G124673
TU184126 lncRNA downstream 85125 6028523 ~ 6028845 (+) False LOC122362599
TU184162 lncRNA downstream 284083 6227481 ~ 6230584 (+) True G124703
XR_006253138.1 lncRNA downstream 347124 6290522 ~ 6290901 (+) True LOC122362614
XM_043216889.1 mRNA upstream 7633 5928406 ~ 5932318 (+) True LOC122323198
XM_043216892.1 mRNA upstream 15388 5921291 ~ 5924563 (+) True LOC122323201
XM_043216584.1 mRNA upstream 19008 5919685 ~ 5920943 (+) True LOC122322966
XM_043216486.1 mRNA upstream 25509 5911025 ~ 5914442 (+) True LOC122322887
XM_043264814.1 mRNA upstream 34036 5902171 ~ 5905915 (+) True LOC122362979
XM_043216888.1 mRNA downstream 10852 5954250 ~ 5958173 (+) True LOC122323197
XM_043216891.1 mRNA downstream 26889 5970287 ~ 5973815 (+) True LOC122323200
XM_043216494.1 mRNA downstream 37293 5980691 ~ 5984732 (+) True LOC122322895
XM_043216541.1 mRNA downstream 44136 5987534 ~ 5991345 (+) True LOC122322932
XM_043216603.1 mRNA downstream 53984 5997382 ~ 6000825 (+) True LOC122322990
TU184051 other upstream 310298 5623453 ~ 5629653 (+) True G124612
TU184037 other upstream 544639 5394895 ~ 5395312 (+) True G124598
TU184019 other upstream 710005 5228563 ~ 5229946 (+) True G124580
TU184016 other upstream 713894 5225808 ~ 5226057 (+) True G124577
TU183987 other upstream 799280 5139490 ~ 5140671 (+) True G124553
TU184110 other downstream 32812 5976210 ~ 5979282 (+) True G124661
TU184178 other downstream 348093 6291491 ~ 6291925 (+) True G124707
TU184202 other downstream 595849 6539247 ~ 6540907 (+) True G124727
TU184395 other downstream 1082920 7026318 ~ 7027135 (+) True G124881
TU184430 other downstream 1229228 7172626 ~ 7173020 (+) True G124914

Expression Profile