RNA id: XM_043216891.1


Basic Information

Item Value
RNA id XM_043216891.1
length 2607
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC122323200
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 5970287 ~ 5973815 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTGGAACACTCTGTATATTTTTCTATACCTGTCATTTAACTTTATCTCTGCATATTCAATCCTCAAATCAGATACATGTCAGCTCCAGGGACGCTTCAAGTTGAATGGAATGTACCAGGATGGAGATTTTATACTTGGAGGCCTGTTTCATGTTCACTTTTTCACAGTCTTTCCAGAACTGAGCTTCAGAACGGTGCCAGAACAACCATACTGTGAAAAattcaATATAGAGATCTTCCAGCAGGCACAGACAATGGCTTTTGCAGTAAATGAGATCAATAAGAATTCAAACTTGCTGCCTAACATCACTCTTGGTTACCATCTTTATGACAACTGTGTGAGACTAGGAATAGCGTTCCGGGCTGCTATATCCCTGGCTACTGGAACAGAGGAGTACTTCTCCAACCTAAACTGCACTGGTCCTCCTCCAGTGATTGGGATTGTGGGAGATCCAAGTTCAACTCCTTCCATCGCAATTTCCAATGTTCTGGGGCTGTTTCGAGTACCTATAGTTAGTCACTACGCCACCTGCTCCTGTTTGAGTGACAGGAAAAAGTACCCCTCTTTCTTCAGAACAATCCCCAGTGATGCCTTCCAGGTTCGGGCTATGGTTCAGATTTTGAAGTATTTTGGATGGACCTGGGTTGGGCTCATCTACAATGATGATGACTATGGCATCTATGCTGCTCAGTCATTCCAGCAGGAAATGCAGCTGTTTGGATATTGTGTTGCTTTTTCTGAAAGCATTCCCCATGATAAtaacaacagaaaaataaaatttatagcAGGAGTGATTCAGGCCTCTACAGCTAGGGTGGTGGTTGCTTTTTCCTCTTCATCCTTTTTAATACCTTTGATGGAGGAGGtggtgttgcagaacataacAGGCAGACAGTGGATTGCTAGTGAAGCTTGGACCACTGCACCTGTATACCACACTCCACGTTTCCTACCAACTCTGGGGGGCACACTGGGCATTGCTATCAGACGTGGAGAGATTGAAGGGTTACATGAGTTTCTTCTACGTCTCCATCCTAGTAATgatcaaaaaaacaatatggtGAGAATTTTCTGGGAAAACATGTTCAGGTGTAGTTTTGAAAAAGGAGGCATAGTTATAGATGGAGAGGAAGTGAAAAAGGTGTGTACAGGACAGGAGGATCTGAGCATCACAGAATCACCATACACTGATGTTTCTGGGCTGAGAGCAGCATATAATGTCTACAAGGCAGTTTATGCACTGGCACATGCACTTCATGATCTGATGCAGTGTGAAGAGGGGAGAGGACCATTCAGTGGGAACAGCTGTGCTGATAAAACCAATCTGAAACCCTGGCAGCTGGTTCACTATCTACAAAAAGTGAACTTTACCACAGGATTTGGGGATAGCGTGTCGTTTGATGAGAATGGAGATGCTCTGGCCATCTATGATGTGATGAACTGGCAGCCGAGCTCTGATGGATCAATACGGATTCATGCAGTTGGTGTAGTAAATAAAGGGGCAGCAACAGAGATGGTGCTCAGACTGGATGAGGATGCAATATACTGGAACTTTGAAACCAAAAACCCCCCAAGGTCTGTGTGCAGTGAGAACTGCCCCCCAGGAACCAGACAAGCCAGGAAGAAGGGCCTCCCTGTCTGCTGTTTTGACTGCCTGCCATGCAGAGATGGAGAGATTTCTAATACAACAAATGCTATTGATTGCACAATCTGTCCAGATGAGTTCTGGTCCAGTTCAAATAAGGACCAGTGTGTCCCGAAAGAAGTAGAATTTTTGTCTTACGAGGATCCTCTAGGAATCTCCCTGACCACTGCCTCTTTGTTTGGCACCTGCATCTGTGTTCTTGTGATGGTCATCTTCGCTCACCACCGTAACACTCCTATAGTACGAGCCAACAATTCAGAGCTCAGCTTCCTTCTGCTGTTGTCACTCaaactgtgttttctgtgtgtgctgCTGTTCATTGGCCAGCCACAGTTATGGACATGTCAGTTAAGACATGCTGTGTTTGGTATAAGCTTTGTCCTGTGCATCTCCAGCATCCTGGTCAAGACTATGGTAGTAATAGCTGTGTTCAAGTCATCTCGACCAGAGGGTAAAGGAGCAATGAAATGGTTTGGAGCAGTTCAACAGAGATGCACAGTTCTGGTCCTAACAGCACTTCAGGTTGTGATATGTGCAGTCTGGCTATCAACTGCCTCTCCAACACCACATAAAAACAACCAGTATATCCGCTCTAAAATAGTATATGAATGTGCTATAGGATCAGTGGCTGGTTTTTCTTTGCTCCTCGGATACATTGGACTGTTGGCAGCAGTAAGCTTCTTGTTAGCCTTCCTGGCAAGGAACCTTCCAGataattttaatgaagcaaAGTTCATCACTTTTAGTATGTTGATCTTCTGTGCTGTGTGGATTGCATTTGTTCCAGCATATGTGAGTTCTCCAGGGAAATATGCAGTGGCTGTGGAGATATTTGCCATTCTAGCTTCTAGTTTTGGATTACTGGTGGCCATATTTGCCCCAAAGTGCTACATCATTCTTTTACATCCAGAGAGAAACACTAAAAATGCCATCATGGGAAGAGTTACACAAAACAAGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184061 lncRNA upstream 310054 5659906 ~ 5660233 (+) True G124622
TU184052 lncRNA upstream 345310 5623906 ~ 5624977 (+) False LOC122323196
TU184043 lncRNA upstream 474643 5495189 ~ 5495644 (+) False LOC122363125
TU184042 lncRNA upstream 476154 5492336 ~ 5494133 (+) False LOC122363125
TU184034 lncRNA upstream 615307 5354713 ~ 5354980 (+) True G124595
TU184121 lncRNA downstream 47426 6021241 ~ 6021636 (+) True G124672
TU184122 lncRNA downstream 49844 6023659 ~ 6023991 (+) True G124673
TU184126 lncRNA downstream 54708 6028523 ~ 6028845 (+) False LOC122362599
TU184162 lncRNA downstream 253666 6227481 ~ 6230584 (+) True G124703
XR_006253138.1 lncRNA downstream 316707 6290522 ~ 6290901 (+) True LOC122362614
XM_043216888.1 mRNA upstream 12114 5954250 ~ 5958173 (+) True LOC122323197
XM_043216890.1 mRNA upstream 26889 5939951 ~ 5943398 (+) True LOC122323199
XM_043216889.1 mRNA upstream 37969 5928406 ~ 5932318 (+) True LOC122323198
XM_043216892.1 mRNA upstream 45724 5921291 ~ 5924563 (+) True LOC122323201
XM_043216584.1 mRNA upstream 49344 5919685 ~ 5920943 (+) True LOC122322966
XM_043216494.1 mRNA downstream 6876 5980691 ~ 5984732 (+) True LOC122322895
XM_043216541.1 mRNA downstream 13719 5987534 ~ 5991345 (+) True LOC122322932
XM_043216603.1 mRNA downstream 23567 5997382 ~ 6000825 (+) True LOC122322990
XM_043264136.1 mRNA downstream 35235 6009050 ~ 6012519 (+) True LOC122362598
XM_043264137.1 mRNA downstream 46734 6020549 ~ 6029121 (+) True LOC122362599
TU184051 other upstream 340634 5623453 ~ 5629653 (+) True G124612
TU184037 other upstream 574975 5394895 ~ 5395312 (+) True G124598
TU184019 other upstream 740341 5228563 ~ 5229946 (+) True G124580
TU184016 other upstream 744230 5225808 ~ 5226057 (+) True G124577
TU183987 other upstream 829616 5139490 ~ 5140671 (+) True G124553
TU184110 other downstream 2395 5976210 ~ 5979282 (+) True G124661
TU184178 other downstream 317676 6291491 ~ 6291925 (+) True G124707
TU184202 other downstream 565432 6539247 ~ 6540907 (+) True G124727
TU184395 other downstream 1052503 7026318 ~ 7027135 (+) True G124881
TU184430 other downstream 1198811 7172626 ~ 7173020 (+) True G124914

Expression Profile