RNA id: XM_043216904.1


Basic Information

Item Value
RNA id XM_043216904.1
length 2673
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC122323211
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 6568959 ~ 6572553 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTTGCCCAGATCCCCAGTTTCCAGTTGGTTTGGCGGAACACTGTGCAGAGATCGAAATGAAGGTGCCAGTTCTCCAGGCTGTACATttggttttttcttttctctatcCTATTCAAAGCAATTCAGAGACAGATTGCAAACTCTGGAAGGACCTAGACTCAACTGTAGTCTATAAAGGGGGCCATGTAGTGCTCGCTGGGATGTTTCCCATCCACTCCAAAGGTATCGACCAGGAGATCAACTTCAGAAGTCAACCAGACCAGAGGAAATGTAGGGGGTTTAACATGCGAGTTTTCCGTTGGTCTCAGGCAATGATCTTTTTCATTGAGGAAATCAACAGAAATCCTACTCTTCTGCCAAACATCACACTGGGCTATCAGCTGTATGACACATGTGGGCTGACTGCTCTGTCTCTGAGGACCGCATTATCTGTAGTTTCTCAGCCCATGAAGAGGAACAATTCAGGGCAGTGCTTCTCCCCGAGCATCCCCATCATTATTGGAGACTCTGGATCTACCCTGTCAATGGCCATTTCAAGACTGCTCAACCTGTTCCGTATTCCACTGGTGAGTTATTTTGCTTCATGTGCTTGCCTGAGTGACAAGCACCAGTTCCCTTATTTCTTTCGCACAATTCCCAGTGATGTCAATCAGGCCAGTGCTCTTGCTCGCCTGGTCAAGCACTTTGGATGGACCTGGGTGGGCACAGTCGGGGCCGACGATGCTTATGGGCTCACTGGCATAGATTTATTCACCACTGCAGTGACGCGTTTGGGCGTATGTGTGGCTTATCGAGTAATCATACCCAAGCTGCCAACTCAGCAACAGCTGCAAGACATCGTCAGGACTATTCGAGAATCTACAGCACGTGTTTTGGTAGTTTTTGCCGTCGAGGAAGACATCAAACCAGTAGTGGATGAAATAGTTCGGCAGAATGTGACCGGGAAGCAGTGGGTGGCCAGTGAAGCCTGGGTGACCTCCACTCTCATCTCTACTAGAGAAAACTACCCCTCCCTTAGAGGTACCATTGGATTTGCCATCCGCCGAGCTGAAATACCTGGCTTCAAAAACTTCCTTGAAAGCATACAGCCCCTGGCTGAGCCTTACAATGCCTTTGCAAGGGAGTTCTGGGAAACACAGTTCCAGTGCTCAGTTAACACAAGTCTTCCCACTCCCTCCACAACTGATCCAGTGCACTACAGTCACAGCTGTACTGGCATGGAGAGAGTTCAGGATACTCATAGTATCTATAATGATGTTTCTGAGCTCAGGGTCACGTATAACATGCACAAGGCTGTTTACACAGTGGCACATGCACTGCATAACCTGCTTCAGTGTCAAAGAGAAAACGGCTCTGCTTTGACACAGCAGTGCCCTGATATCCATAATCTACAACCATGGCAGGTTGTTGAGGTCCTGAAAAAAGTGaactacacaaacacatttgGAGATGCGATCCACTTTGATAAGAATGGAGACCCTGTCGGGTCATATGATATAGTGAACTGGCAGAGAGACGCAAATGAGGGTCCGGTACAATATGTTACAGTAGGTCGCTTTGACTCCTCTCTCTTGACAGCACAACAGTTAGTGCTGAACCAGGACAAAATCATCTGGCATGGGGGAGCTAACAAGATACCAGTGTCTGTGTGCTCCACCAGCTGTCAACAGGGATACAGAAAGGTTACACGAGAGGGTCAGCCCGTGTGCTGCTATGACTGTGTGCTTTGTGCAGAGGGTAGCATCAGCAATACGACTGATCAAGTTGAATGCATTCTTTGCCCTGAAGACTTCTGGTCCAATCAGCATCGCAACCATTGTGTTCCCAAGCAGATTGAGTTCCTGTCCTACTCTGAGCCTTTTGGCATGGCCTTGGCGGCTATAGCCATTCTGGGTGCAATTGCTGCGATGACAGTTGCTGCGATCTTCTTTCGCCATCACGACACACCCCTAGTTCGTGCTAATAACTCAGAATTAAGCTTTCTATTGCTGATGTCTCTCACTCTTTGCTTCATATGTGCGCTAACCTTCCTGGGTCAGCCATCACGGTGGGCATGCCCTCTTAGACGGACTGCTTTTGGCCTGACCTTTGCCCTCTGCCTCTCCTGTCTCCTCAGTAAGACCCTAGTGGTGCTTATGGCCTTTAAAGCTACATTGCCTGGTAATAACACAGCTCGTTGGTTTCGCCCACCTCAGCAGAGACTTGGCGTGTTCTTATGTTCGGTACTGCAGGGTGGGGTTTGTGTAGCTTGGCTTACAACAGCACCTCCGTATCCAGTAAAGAACACTTGGCTTTACCGTGACCGGATCATTTTAGAATGTCACCTGGGTTCAGTCGCCCTTTTCTGTTGTGTGTTGGGTTACATTGGCTGCTTAGCTGTGTTTTGCTTCATCCTGGCTTTTTTGGCTCGTAAATTGCCAGATAATTTTAATGAAGCTAAATTCATCACATTCAGTATGCTCATATTCTGTGCAGTTTGGATCGCCTTTATCCCAGCTTATGTCAGTTCTCCAGGAAAATTTACTGTAGCTGTGGAGATATTTGCAATATTAGCTTCTAGTTATGGAGttcttttgtgtatttttgcacCTAAATGTTACATCATAATTTTCCTGCCTGAGAGAAATTCAAAAAAGTATCTCATGTcacaaaaatgatgttttcacgtcttt

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184200 lncRNA upstream 29967 6538546 ~ 6538992 (+) True G124725
TU184183 lncRNA upstream 272523 6295930 ~ 6296436 (+) True G124711
XR_006253138.1 lncRNA upstream 278058 6290522 ~ 6290901 (+) True LOC122362614
TU184162 lncRNA upstream 338375 6227481 ~ 6230584 (+) True G124703
TU184126 lncRNA upstream 540114 6028523 ~ 6028845 (+) False LOC122362599
TU184229 lncRNA downstream 5272 6577825 ~ 6578301 (+) True G124754
TU184235 lncRNA downstream 117159 6689712 ~ 6691401 (+) True G124760
XR_006253150.1 lncRNA downstream 185151 6757704 ~ 6758458 (+) True LOC122362680
TU184270 lncRNA downstream 188230 6760783 ~ 6766466 (+) True G124783
TU184281 lncRNA downstream 232930 6805483 ~ 6805688 (+) True G124793
XM_043216906.1 mRNA upstream 2350 6562926 ~ 6566609 (+) True LOC122323214
XM_043264142.1 mRNA upstream 405093 6160559 ~ 6163866 (+) True LOC122362605
XM_043264137.1 mRNA upstream 539838 6020549 ~ 6029121 (+) True LOC122362599
XM_043264136.1 mRNA upstream 556440 6009050 ~ 6012519 (+) True LOC122362598
XM_043216603.1 mRNA upstream 568134 5997382 ~ 6000825 (+) True LOC122322990
XM_043263886.1 mRNA downstream 152277 6724830 ~ 6734282 (+) True LOC122362447
XM_043264225.1 mRNA downstream 164522 6737075 ~ 6759776 (+) True dhx36
XM_043264223.1 mRNA downstream 228875 6801428 ~ 6804684 (+) True LOC122362675
XM_043216569.1 mRNA downstream 245016 6817569 ~ 6829622 (+) False cd151l
XM_043216570.1 mRNA downstream 245303 6817856 ~ 6828280 (+) True cd151l
TU184202 other upstream 28052 6539247 ~ 6540907 (+) True G124727
TU184178 other upstream 277034 6291491 ~ 6291925 (+) True G124707
TU184110 other upstream 589677 5976210 ~ 5979282 (+) True G124661
TU184051 other upstream 939306 5623453 ~ 5629653 (+) True G124612
TU184037 other upstream 1173647 5394895 ~ 5395312 (+) True G124598
TU184395 other downstream 453765 7026318 ~ 7027135 (+) True G124881
TU184430 other downstream 600073 7172626 ~ 7173020 (+) True G124914
TU184436 other downstream 605286 7177839 ~ 7178276 (+) True G124920
TU184604 other downstream 1603800 8176353 ~ 8536948 (+) True G125041
TU184804 other downstream 2786883 9359436 ~ 9365488 (+) True G125192

Expression Profile