RNA id: XM_043216931.1


Basic Information

Item Value
RNA id XM_043216931.1
length 1069
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC122323232
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 6868863 ~ 6871482 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTTTGTGACACGCTGGCCACTTCCCACTTCTCTTGTTTAGAATCAGCCTAAGTTCAAACTAAAGTTTACTTATCAGCGATAGCACGTACTCAAGTGAACATGGGCAAAATCGAGTGGGCGATGTGGGCAAATGAGCAAGCCCTGGCTGCTGGACTCATTTATGCGACTGGTGGGGTTGTTGGGGTGGCCGGTCAGTTCAGAGGCTGGCAGTTTGCAGCTTTCGGCATTGCTgccggtgtgtttgtgtgtttgcttgaATATCCGCGGAGCAAAAGGGGCAAAGGCACCAGCGTTGAGAGGACTGGTCAGTACTGCTTCACAGTTTGTGTAAAAGCTTTTGGACCCCTGACCAGAAACTATTATGTCAGAGCATTTTTGCACGCTGCGCTGTGTGTTCCTGGAGGTTTCATGTTAGCCACAGTTCTGGGATGTGTGTGTCTAGGAATTGCCAGTTTGATCTATCTTTCAGCAGCTATTCATGGAGAGCATTGGGAGCCCATACTGCCACGTACAGAGCCGCCAAAGCGTGTTGGGGAGAGCATCAAAGAACCTCCTCAAAACCCTCCACCTCGTCCTCCTCCTGAACTCCGCCGGAAGAAAGCAGATAAACTAGAGACTGCTGTGTATGACAATCCCATGTCTGTGACCGTCAATGAATAAGGATTCTATTGTGGAAACAGTAACCTATTATTTAAGGAGGTTTCAGTGACAAGTATCTGTTTTGAGTTTATACCTGTATATCTGTTTTGAGTCTAACAAAACTgcaagacagagagagagagagagccagcaCTAACttttatcatgtttattttataatatctttGGTGTATTACTCTTGACCGATTTGAAACATcccatttattattgttactaaTAGAAGAGCAATTTTTATGTAagagattttagtttttatcataaatataatcaaagaagaaaaaacaaaatttacTGGAATGATGTTTAAGTGTTAACAGTGATTGTGTATATTTACCtcaagagagtgtgtgtgtatatagttaTGTCTTAATATGTGTTTACAATAAACTCAGGATGTGCTTTATTCAA

Function

GO:

id name namespace
GO:0020037 heme binding molecular_function

KEGG:

id description
K08009 CYBA, P22PHOX; cytochrome b-245, alpha polypeptide

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184287 lncRNA upstream 31941 6836700 ~ 6836922 (+) True G124799
TU184283 lncRNA upstream 54228 6814324 ~ 6814635 (+) True G124795
TU184281 lncRNA upstream 63175 6805483 ~ 6805688 (+) True G124793
TU184270 lncRNA upstream 102397 6760783 ~ 6766466 (+) True G124783
XR_006253150.1 lncRNA upstream 110405 6757704 ~ 6758458 (+) True LOC122362680
TU184377 lncRNA downstream 56142 6927624 ~ 6927950 (+) True G124866
TU184378 lncRNA downstream 56845 6928327 ~ 6928540 (+) True G124867
TU184388 lncRNA downstream 69277 6940759 ~ 6941102 (+) True G124877
TU184418 lncRNA downstream 162961 7034443 ~ 7034667 (+) True G124902
TU184420 lncRNA downstream 183910 7055392 ~ 7055773 (+) True G124904
XM_043263916.1 mRNA upstream 24536 6841363 ~ 6844327 (+) True pdcd5
XM_043264118.1 mRNA upstream 34300 6831770 ~ 6834563 (+) False uraha
XM_043264117.1 mRNA upstream 34300 6831963 ~ 6834563 (+) False uraha
XM_043264116.1 mRNA upstream 34300 6831968 ~ 6834563 (+) True uraha
XM_043216568.1 mRNA upstream 39241 6817914 ~ 6829622 (+) False cd151l
XM_043264790.1 mRNA downstream 1318 6872800 ~ 6910075 (+) True tcf25
XM_043264206.1 mRNA downstream 64474 6935956 ~ 6938158 (+) True mc1r
XM_043264462.1 mRNA downstream 89633 6961115 ~ 7019049 (+) False def8
XM_043264463.1 mRNA downstream 89633 6961115 ~ 7019049 (+) True def8
XM_043264467.1 mRNA downstream 89634 6961116 ~ 7019049 (+) False def8
TU184202 other upstream 327956 6539247 ~ 6540907 (+) True G124727
TU184178 other upstream 576938 6291491 ~ 6291925 (+) True G124707
TU184110 other upstream 889581 5976210 ~ 5979282 (+) True G124661
TU184051 other upstream 1239210 5623453 ~ 5629653 (+) True G124612
TU184037 other upstream 1473551 5394895 ~ 5395312 (+) True G124598
TU184395 other downstream 154836 7026318 ~ 7027135 (+) True G124881
TU184430 other downstream 301144 7172626 ~ 7173020 (+) True G124914
TU184436 other downstream 306357 7177839 ~ 7178276 (+) True G124920
TU184604 other downstream 1304871 8176353 ~ 8536948 (+) True G125041
TU184804 other downstream 2487954 9359436 ~ 9365488 (+) True G125192

Expression Profile