RNA id: XM_043263916.1


Basic Information

Item Value
RNA id XM_043263916.1
length 1050
RNA type mRNA
GC content 0.43
exon number 6
gene id pdcd5
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 6841363 ~ 6844327 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGCATTGTATTTTGGATTAGCAAGGACTGATCCAGATACGCATAAAGGATTATAAAACAGCGAAAGTCTTTATCGATGCATTATGTTCTGCATTTGACTGGACTTTACACAAGGATCTGAGTGTTACGTGCAGTATTTAGATGACCTGAAGAGGGCAGCAATACGCCGTCGTTGCATATAGTTTGTCTCGAATTATACACGAAGAAGAACGTAGCCACACTCGCCGTAGCCTACCGTCCAGAAGCAAAACACGCAGTCGGATTGTGTCGCGTTTGTATCTGAAAGCTTGCTCTGTCATTAAAAATGGCTGATGAAGAATTAGAAGCCATTAGGCGGCAACGTATGGCAGAACTGCAGGCGAAACATGGGGATCCTTCTAGTGACCAGCAGGGGCAGCAGGAGGCCAAACAGAGAGAGACGGAGATGAGAAACTCTATATTGGCTCAAGTCTTGGATCAGTCTGCCCGTGCCAGGTtgagTAATTTGGCTCTTGTGAAGCCAGATAAAGCGAAAGCAGTGGAGAATTACTTGATACAAATGACTCGCTTTGGACAGCTTGGAGGAAAAATTACAGAGGCTGGACTAATAGAGATCCTGGAGAAAGTCAGCcaacaaacagaaaagaaaacgaCTGTAAAATTTAACCGACGACGGGTAATGGACTcggatgatgaggatgatgactGATATGCAGGTGTCACGAGTCAGCTAGGCTTTCTGTCCTCATGGTACTGCTGACCAGGACATTACAGTGACTGACAGATCAGTTGCATTGCCCAAATTACAATCACAGCCAAAGAATTTTGATCTGCGCTGACACAGGAACTCGGTTactgtttttcacttttagtttaGCAGATTTACTTCATTCAACACATTGCAGCAAAGCGGCTACATATTTAGAGActtattttgtgaaaacagtGGACAATTCTGATCTGTTATTGCAATAATTGGAACTTACCCTTACCTTTGATTGTGTGGACTTGTTTTGAAGAAACCTATACGTGCaactgtttacataataaaaggccttaaacaaaaatgaa

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG:

id description
K06875 PDCD5, TFAR19; programmed cell death protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184287 lncRNA upstream 4441 6836700 ~ 6836922 (+) True G124799
TU184283 lncRNA upstream 26728 6814324 ~ 6814635 (+) True G124795
TU184281 lncRNA upstream 35675 6805483 ~ 6805688 (+) True G124793
TU184270 lncRNA upstream 74897 6760783 ~ 6766466 (+) True G124783
XR_006253150.1 lncRNA upstream 82905 6757704 ~ 6758458 (+) True LOC122362680
TU184377 lncRNA downstream 83297 6927624 ~ 6927950 (+) True G124866
TU184378 lncRNA downstream 84000 6928327 ~ 6928540 (+) True G124867
TU184388 lncRNA downstream 96432 6940759 ~ 6941102 (+) True G124877
TU184418 lncRNA downstream 190116 7034443 ~ 7034667 (+) True G124902
TU184420 lncRNA downstream 211065 7055392 ~ 7055773 (+) True G124904
XM_043264118.1 mRNA upstream 6800 6831770 ~ 6834563 (+) False uraha
XM_043264117.1 mRNA upstream 6800 6831963 ~ 6834563 (+) False uraha
XM_043264116.1 mRNA upstream 6800 6831968 ~ 6834563 (+) True uraha
XM_043216569.1 mRNA upstream 11741 6817569 ~ 6829622 (+) False cd151l
XM_043216568.1 mRNA upstream 11741 6817914 ~ 6829622 (+) False cd151l
XM_043216931.1 mRNA downstream 24536 6868863 ~ 6871482 (+) True LOC122323232
XM_043264790.1 mRNA downstream 28473 6872800 ~ 6910075 (+) True tcf25
XM_043264206.1 mRNA downstream 91629 6935956 ~ 6938158 (+) True mc1r
XM_043264462.1 mRNA downstream 116788 6961115 ~ 7019049 (+) False def8
XM_043264463.1 mRNA downstream 116788 6961115 ~ 7019049 (+) True def8
TU184202 other upstream 300456 6539247 ~ 6540907 (+) True G124727
TU184178 other upstream 549438 6291491 ~ 6291925 (+) True G124707
TU184110 other upstream 862081 5976210 ~ 5979282 (+) True G124661
TU184051 other upstream 1211710 5623453 ~ 5629653 (+) True G124612
TU184037 other upstream 1446051 5394895 ~ 5395312 (+) True G124598
TU184395 other downstream 181991 7026318 ~ 7027135 (+) True G124881
TU184430 other downstream 328299 7172626 ~ 7173020 (+) True G124914
TU184436 other downstream 333512 7177839 ~ 7178276 (+) True G124920
TU184604 other downstream 1332026 8176353 ~ 8536948 (+) True G125041
TU184804 other downstream 2515109 9359436 ~ 9365488 (+) True G125192

Expression Profile