RNA id: XM_043263942.1


Basic Information

Item Value
RNA id XM_043263942.1
length 5606
RNA type mRNA
GC content 0.41
exon number 4
gene id synm
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 4114968 ~ 4123704 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCCTCCGCACTTGTTCGACTCTGCCTCCGCCCTGCGTTTCTCAACGACGCAGAACACTGATGACAACGAAATAACTGACAGGTATTAGCACATTTAAGACTAAACCAAAGCTATTAGATCGACACAACTACAAAGGGAAATGTTTCGAATGAGGGAACCGTTTGAGAGCGAAAAGCTCCAACTACAGGAGCTCAACCAGAGACTCGGCCAGTACCTAATGCGCGCAAAACAGTTGGAGCAAGAAAATACCAGCTTGATAAGCGAAATTAATTCAATCCGAAAAAACAGGTCTGGAGAAtgggaaaacaaacacatgtcCGAGCTCCGGGAAATGAGGAGACTGGTGGAGCGTTTATCTTTCGAGAAATGCAGAGCAGAGATGGAGCGACAGAAGCTGCGCAATGAACTTCAGATGCTTCAAGCGATGCGTTCAGAGGAGGCTTCGGTGAGCAAAGGCGTCGACACGGAGCTGAAAGGCTGCGAGAGGCAGCTCCATAACGCTCTTCAGACCAACGGTGCTTTGGAAGATCGCCTCATTGAGCTCGAAAACGAATATAAGTTTTTGGAAGATGCCCACAGAAAAGAAATCGCACACCTGAGGGACCAGGTGCACTCCCGAACTGTACGCGTCGTGACTCAAACGTATCACGCACCTCCAGCAGTTACGATGGAAGAGGTGCAGGAGTACGCGGCCAACTTCACCGAAAACTGGCAGGGGACTTTGGACATGTATCGCCTGAAGGCAGAGGAGATCGAAGAGTCTATAAGAGCAGACCAGGCCAGGCTGGACGACATTCAGAGGGAGAAGAGGGAATACGCTTCACAGTTCAAGAGGCTGCACGACGAGATTGAGAAACAAACCAAAGTGCAGCTGAACCTTGAGGAGCATCTCATGAACATGCAAGAAAATTTCAGAGCTGAAATCTGCAAGTATCAGGCTATCATTGAAGAACTGGAGTATGAGCGCAGAATGCTGTCTAACACCATCTCAGAGAAGCTGAAGGACCATCAGGATCTCTTACAGGTCAAGATGGGCCTTGCTCTGGAAGTGGCTGCATACAGGGCACTCTTGGAAGAAGAAGGAAGACATGTTCAAACGTGGCCTACTCAGCATTCAAGAGAAAGAATAATAGATATAAAAATGCCGGCCCATACTTACACTCCAAGAGTGTCTGTCAATTCGGCAAGTCGACCAGACATGAGGAAAAAAGCCTTTACAGAAGTGAAATATATGGAACCAGTTTCTAGCCTGAGAACCTCATCTACTTCAAGTCAGTTTCATTCTTACGAACCCTCCAGGATCGTGCCTATCAGTGTATCAAATCGTGCCCAGCAAAGTCCTGCTTCAAGAAGAGACATGATTTCCTTCACTAAAGCAGCACAGGCAGCTGCTTCCAGTACCCCAAAACCTGGAGTCTCTTCTGTTGAGATAAAAAGAGAGGAGACAGATCACGATCATAGAATTATGAGAAAAGAGATTTCACAGCACTCTTCAAAGGGCTCGCTTGATCATACCCCATCTAGAATTGAAAGTACACAAAGCTCTACAGccttaaaaatacagaaaccaAAGCCAGTGAAAGTGATATCACCTCCTGTGAGTTTGAGCAAGACCACCACTGAAGAAAGCCGGAAAGATGTTGAACCAAAAGCAAAGAGAATGGATGCCAAACAAGATAAAGAAAAATCCAAGGTAACAATGGAAGCTAAAGATGAGAAAGAGTGTGAAAATGTAGGACATAAGGTGTTTATAGGTGAGGAAAAAGTTTTAGATGCAGTTTCTATGGAGGAAATTATTCAGCAGGTCATGAAACCAGCTGGTTTAGATCCTAAGGTCAGCTCATCCCCTGACTCAAAAGTCACATATCATGTggagaaaacagagaaagaggaTGGAACCACCAAGACTCAGATTGTCTTACAATCTAAAGTCGAGGAGGAAGTGGACCTGTCGGAAGATTCTGCCTTGGAGGAACTTCTCAGCAAAGGAGTCACGAAAGTCACCCTGGAGAACATAAAAGGAACCCCAACAGGAACAATGATTGAGAACTTGCTGAGTCTTGGCCTGCAAGGTGAGAATTTGGAAAATAGGTTAGTGAATGTCGAGATAATAGAGGAACCGGTGGAGTCTGATGAGGAAGGTGAAATTGAAATAGAGGAGACTGTGGAGATTAAGTCTAAACAACCAAACATCGATCCCTCATCGATGTTCTTCCAAATCGAGGAGTTGGAGAGTGACCCTAAGACCATGAAACCTGATAAGAGTGGTTCTGCTGAAGCCTCAAAATATGGAAACAGTGGCTCTGTCCAGGTTCAGGAAGTTACCAGAGATGAAAGCTTACCCTACTTCTCGCATGGCCAAGACTCACAAGAGTACTTTGTCTCCACTCCTGAAGACAATATGTCAGAGTCTGAGGAGGGTGGGAGGTTTATGTCTTATAGCCATTATGGAGTCGTTGATGATCTGTCTGATGAAAGATATTACCAGGAAGACGATCCCAAACAGCCCACTGCGGAAGGTCACAGTTACAGAGATTCACCTGAATATGAACATTcgtttttgagagacaatatcCAAGACTGCATAATTGAAGAGGAGGTGCATGTCTCTCCCACACTGCAACAGTCCATTGTGGGGATCCTCAGGGAGGACTCACTAGACCCTGAACAGCAGCTTAGAGGAGCATTAGAGCAAATCCAAGACACTGTATCTGGAGCCCTCAAAGAAGAGCTTGCCTTTTTTACGAAAGGTAGAGAGACTCCAGAAAATGTCTCCGTAGACATTAAAAAGGTAGAACAAGTTACAGACAATGGAACCATGACCATTGTGGCAGAGCTTAATGTTTCCCAGACATTGGAGGAGTCTGGGTTGCTGGAAGGAGAAGATGATCTATCTGAAGAGCAGATAATGGCAGCACTAAGCTCATCCCACCCAAATCTCCAGCAGGCTATTGGCGGAGGAGCTGGAGTAGGATACACCATGAAAATTTCCCAAGACGAGATTCAAATGGAGGGAATGCCATGGATGACCGGTGATGAAGAGATCCGACAATGGAGCTCAACTGATGAGGCTGGCAAGACTGAAAAACACATCAATCTGGGCCCTAGTGAGAAATCCTTCACTTTTCAAATGGATGTGAACAATGGCTCTTCAGCATCAGCAAGCGGAGGAGCCGTTGAAGTACAAAGAAGCGGCAGTGCTACTGATTTCCCACAAACCCAGATGATTGATCCCCACTTGAAGGTCTGTCATGAGAAAAGGGTCGCAACTGTTTATCTCGAAAGTCCCAAAGAGTGATATCAtaacaaaatcaaattaattattaattaaattacacaaaatatcATGTCAATCACATAATTAGTTATAAATCGGACAAATGAAACAAGGTTTTTGTAAACCAAAAAGCCATGGTCCATCATGactatacactactgttcaaaagtttggggtcagtaacatttaaatttttcagaaattatgcattaaattgatccaaAGTTACAGTAGAAACATTTCTGTtggtttctgttttaaataaatgatgttgaatgatgtgacactgaagacatgattaaggctgctgaaaattcagctttaattttttttaatttacaggagtcaaatacatattaaaatacactCAAAATATACTTAAACAGTCaattgaaactgaaaaaaaaaatcatacaaatgttttactttaattctaaaaaaatgcaGCTATGGTGAGcgtaaatggcaaaaaaaaagatgcttcaCGATGccaaagaacctttttgtctaaatggaaataacctttaacatctgaagaaactTTCTGTTGTTCAGATTatgtaagaaagagatggttatTTAAAGAACGATCGActtgaatggttctttgtggaaccaaaaatggttcttctgtggcatcgctatgaagaaccttttaagcgtCTTTATTGTTCTTTCAAAACCCCCAAGCATTTAAATAGCAGTGTATTTGACATTTAGTacctaatgtttttgtttgatcttgaagtatatttttgtattaactatctggagattttattttacttcattttcatATAGTGCAGCTTTATCTAAGCACAGAAAAAGTGAaattcagtgttttcttttcaatGTTTAAGTAGCAATcctcttaaaaatatacattgttGAAACGATTTGTTCTACTTTCCACAGCACTGCAGAGGCAAGCTTGGCATGTTATAAAAGCCTGTTTATGATACATCATTAAAGAATGAACAgatgcatacatttacaaaattatgCAGAAATTGTAGAGTATTGCTCTCTTTAATTGGCCATTTATTCAAAACTTTATTCATAGTATCACAGATATTTTCAGTaacacatttgaatatttttggcCACGCccatgaaatcattttatttagtggtCTGCATTTGGCCACAGTCACTGTATTGCTCTACTGAAGGCGAAAAGCACTAGACTGTCCTTCCTGTCTCCCAGAGATCTCTTAATCCTTAAATGACATTAGACCAGCGAGGACTAATCTAGCTATCCTGCTCTTCCAGGACAACCCATTTTTCATTGCTCTAGTACTGTACAAGGATTGTGGGAGAGGGAGGAGTGTGATCGTAGAAAtctcacattaaaaataagtgcTAGGCAGCTTACACAGAAGTGTGTAAGTGCTTCCAGAATAGCTGTTCGGTGCCATTAAGTCTGTGTCACAACCTATTACACAGAATGAGGATTCAGCTTCACTAAAGAGGGGGTCTAATGAGAGTCTATTTTTAGGATTCATACTCTGCCATTGACACCTATGTAAAATAGCGTTAATCTTCAGTCTGAGGATTTAAGGTGTAAGCATGTGCTATTTTTCTATTATCTTTAACAGATATTAATGTTAACGTCATCAGATACTGCAGTGGTGACTGTCCTGTGCCTATTAACAGTGAtggggatgaaaaaaaaaaaaatctagaatttcaactttatttagGGTTTCATGGCTGTATTCTCAATATAATGTTAACACAGTGATACCAGGAGTTTggatacatttaattttacttcaTAACCTAAAAATTACTAATCAGTGGTGCTGAatctcatttatttactcattttcatGCTCACAAtatgatttttcacatttaagtgACTTAAATAGCAAGGCGACTAAAACAcctttttggtttgtttttgttaaagggCTGTTTGGGTCTTATTGATTAGgctgttacataaaaaaagattggGAAACACTGTGTTAACACATACGTGAGTGATTAAAGATTAGtctatttatcattattaaccACCTATCTTCATCTCCTTGAGATGGTGTTTCAGCACCTGCTGTTTTTTGTCTGAATCTATGCATAGGGTTCTACGACTCAACCAACACTGTGTGAAACCTCATTTTGCACAGATTTACACTACGCTATAGTAGATTTACTGCCATAGCAAACATTGGTTTGGGATTGCAGATTACAGATGTATTTTTGCTAAATGAAATTTCACAAAATGGATGTTGTGTGTTGTACTCTTAAGAAAAAGACTAGTCGGCTCACTGTCTGAACATTGGTTTACATgcaaacacaataaacaaaCCCTTACAGCTT

Function

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K10376 DMN; desmuslin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183367 lncRNA upstream 1911 4109426 ~ 4113057 (+) True G124095
TU183369 lncRNA upstream 5828 4108730 ~ 4109140 (+) True G124097
TU183416 lncRNA upstream 221582 3869668 ~ 3893386 (+) True G124121
TU183400 lncRNA upstream 371216 3743477 ~ 3743752 (+) False nrn1la
TU183364 lncRNA upstream 491815 3622874 ~ 3623153 (+) True G124092
TU183473 lncRNA downstream 2665 4126369 ~ 4126773 (+) True G124158
TU183475 lncRNA downstream 10374 4134078 ~ 4134586 (+) True G124160
TU183476 lncRNA downstream 11679 4135383 ~ 4135600 (+) True G124161
TU183654 lncRNA downstream 55336 4179040 ~ 4179356 (+) True G124292
TU183655 lncRNA downstream 56722 4180426 ~ 4181289 (+) True G124293
XM_043264982.1 mRNA upstream 6770 4028238 ~ 4108198 (+) True igf1ra
XM_043216712.1 mRNA upstream 100427 4007475 ~ 4014541 (+) True anpepa
XM_043216751.1 mRNA upstream 109399 4002956 ~ 4005569 (+) True si:dkey-12e7.1
XM_043264149.1 mRNA upstream 143867 3966372 ~ 3971101 (+) True syt19
XM_043264719.1 mRNA upstream 148899 3963266 ~ 3966069 (+) True si:dkey-12e7.4
XM_043264536.1 mRNA downstream 13292 4136996 ~ 4177118 (+) False cttnbp2
XM_043264535.1 mRNA downstream 13300 4137004 ~ 4177118 (+) True cttnbp2
XM_043264070.1 mRNA downstream 76677 4200381 ~ 4213997 (+) False asz1
XM_043264071.1 mRNA downstream 76677 4200381 ~ 4213997 (+) True asz1
XM_043264072.1 mRNA downstream 91717 4215421 ~ 4223120 (+) True wnt2
XR_006253139.1 other upstream 371212 3719888 ~ 3743756 (+) False nrn1la
TU183320 other upstream 560278 3511966 ~ 3554690 (+) True tmem170a
TU183022 other upstream 1809390 2302526 ~ 2305578 (+) False plin1
TU182722 other upstream 2112678 2001786 ~ 2002290 (+) True G123664
TU182587 other upstream 2543037 1565426 ~ 1571931 (+) True G123568
XR_006246974.1 other downstream 617164 4740868 ~ 4740965 (+) True LOC122323235
XR_006246980.1 other downstream 617551 4741255 ~ 4741324 (+) True LOC122323241
XR_006246981.1 other downstream 617850 4741554 ~ 4741651 (+) True LOC122323242
XR_006246975.1 other downstream 618603 4742307 ~ 4742435 (+) True LOC122323236
TU183924 other downstream 635933 4759637 ~ 4793251 (+) False LOC122322928

Expression Profile