RNA id: XM_043263974.1


Basic Information

Item Value
RNA id XM_043263974.1
length 2350
RNA type mRNA
GC content 0.53
exon number 11
gene id slco3a1a
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 2340370 ~ 2392967 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCGCCTCTACCGAAGTACGTACTGTACGAGAAACGCTCGCATATCAGTCCTAATGACCGAGGAGGAGAATCAAGCCCGGGGACCTGAGCGATGGTGACGGCACACGGGCAAACACTAACACGACGGGAGCTCGGACGGTCTCGGGGGGGAACAAAGATGTTTGGAGTAAAAACCAGCGACGCTTTATTCAACGTTTCAGCGACAGAGCGCGCGGGAGGAGAGTTTAGTGCGGCTTCGTTCATCGGCGGAGTTTCAATGAAAAGTCTGCGAGCTGTCACGCGTTACGGGGTCCGACTGTAAACAGCAGTCAGCGCCACAGAGAAATAGAGACACGCTTTGAGTTAGCGTTTATTCTGCGTTTGCGATAGTTTCTCGCTGCGCTTCTGGGCTTGTCGGTTCGCTCGCGATGCAGGTGAAAAAGCAGAGGAGCTCCGAGGACCCTCAGCGGGATGATATGAAGAAAAAGCCCTCGTGTTTCtcaaatattaagatatttttagtgGCGGAATGCGCTCTGATGTTGGCACAGGGCACTGTGGGTGCGTACTTGGTGAGTGTGCTGACCACACTGGAGCGCCGCTTCAATCTTCAGAGCGCTGATGTGGGCGTCATCGCCAGCAGCTTCGAGATTGGCAACCTGGCTTTCATTCTCTTCGTTAGTTATTTTGGTGCTAAAGCCCACCGCCCTCGATTAATTGGCTGCGGAGGCATTGTCATGGCTTTGGGAGCGCTGCTCTCTGCATTACCAGAATTCCTCGCCAGTCAATACAAGATCACGGACACATGGAGCAAGGATGTGGGGCGAGACGTGTGCTCCAACACCTCTAAAGCTGACGAACCGTGTGGGAATAGGGCCAACACCAACATGATGTACCTGCTTCTGATTGGAGCCCAGGTGCTGCTGGGTATTGGTGCCACACCTGTTCAGCCCCTGGGTGTGTCCTACATAGACGATCATGTGCGGAAGAAAGACTCCTCTCTCTATATAGGCATACTGTTTTCTACACTGGTGTTTGGACCTGCTTGCGGTTTCATCCTAGGATCTGTCTGTACCAACTTTTATGTGGATGCTTTGTTCATCGACACAACTAAGCTGAACATCACTCCTGATGACCCCCGTTGGATCGGTGCATGGTGGGGAGGTTTTCTCCTCTGCGGTGCCTTACTCTTCTTCTCGGCCCTCTTCATGTTCGGTTTCCCCCAGGCTCTGCCCTGCAAGGAGGTGGAGGGAGGTACTGAGAGCGAACAGGCCATGCTGCCCTCGTCTTTACCCCAGGATTATGAGAAATCCAAGCCCAGCAACGGAGTCCTGCAGAACTACCAGCCCAACAGCAACAGTCTGTCCTGCTGCCAGCAGCTCCGAGTTATTCCCAAGGTGACCAAGCACCTGCTGTCAAACCCGGTGTTCACGTGTATCGTCTTAGCTGCCTGCATGGAGATTGCTGTCGTCGCTGGGTTTGCTGCCTTCCTGGGCAAATATCTGGAGCAGCAGTTCAACCTCACCACCACCTCTGCTAACCAGCTGCTGGGGATGACGGCCATCCCGTGTGCCTGTCTGGGCATATTCCTGGGAGGATTGCTGGTGAAGAAGCTGAACCTGTCTGCTCTGGGAGCGATCCGAATGGCCATGCTGGTCAATCTGATCTCCACCGCCTGTTATGTGTCCTTCCTCTTCCTGGGCTGTGACACAGGACCTGTCGCTGGGGTGACCGTCGCCTATGGCAACGAgACACTGCAAGTAGGCCAGAGGCCGGAAGCCCCCTGCATGAGTCATTGTAACTGCTACACTTCATCCGTTAGCCCGGTTTGTGGCTCCAACGGTGTGACCTACTTGTCCTCCTGTTTCGCTGGCTGCACCAGAGCCATCAGCACCGGACTTCCACCTCCTCTCTCTCAGAATATGACGGGATGCTCGTGCATCTCCACATACAATGACTTCGCCACAGCTGTGCCAGGCAAATGCCCGCGTCCCGGCTGCCAGGAGGCTTTCCTCACCTTCCTGTGTGTGATCTGTGCCTGCAGCATGATCGGAGCCATGGCCCAGACGCCCTCCGTCATCATCCTCATCAGAACTGTGAGCCCAGAGCTGAAGTCATACGCTCTTGGAGTTCTTTTTCTATTACTGCGACTGTTAGGAACATTGAGGATTCACAGAAATTTCACTTAAAAAGCTTTGTCCTTCAGTCCAACAGAAATTCAGTCTTGAATGCTGCTCCTACTTCACTAGTCACCTATAGAAAGAGCAAAGTCTCCTCTTCTCCAGTTCCACTGCCAGGCATAAAGAGCAAAACCAGCAATTCATCCTCACCAGAATGGACTTTCAACAGAACCTTGTCTAACCTCATCAGG

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006246969.1 lncRNA upstream 8797 2322589 ~ 2331573 (+) False LOC122323220
XR_006246971.1 lncRNA upstream 8797 2324316 ~ 2331573 (+) True LOC122323220
XR_006246970.1 lncRNA upstream 10686 2322589 ~ 2329684 (+) False LOC122323220
TU182978 lncRNA upstream 100111 2238913 ~ 2240259 (+) False LOC122363059
XR_006246962.1 lncRNA upstream 279145 2054520 ~ 2061225 (+) True LOC122323174
TU183049 lncRNA downstream 17837 2410804 ~ 2416604 (+) False chd2
TU183050 lncRNA downstream 17837 2410804 ~ 2461790 (+) False chd2
XR_006246929.1 lncRNA downstream 47070 2440037 ~ 2512970 (+) True LOC122322992
TU183059 lncRNA downstream 52634 2445601 ~ 2449435 (+) True G123868
XR_006246946.1 lncRNA downstream 202520 2595487 ~ 2598265 (+) True LOC122323097
XM_043216908.1 mRNA upstream 21230 2301758 ~ 2319140 (+) True plin1
XM_043216909.1 mRNA upstream 21230 2301758 ~ 2319140 (+) False plin1
XM_043264938.1 mRNA upstream 100110 2207199 ~ 2240260 (+) True LOC122363059
XM_043265015.1 mRNA upstream 173079 2159316 ~ 2167291 (+) True zgc:162879
XM_043264685.1 mRNA upstream 184867 2095553 ~ 2155503 (+) False sema4ba
XM_043264868.1 mRNA downstream 17766 2410733 ~ 2439836 (+) True chd2
XM_043264828.1 mRNA downstream 453076 2846043 ~ 2853173 (+) True nr2f2
XM_043264829.1 mRNA downstream 453078 2846045 ~ 2853173 (+) False nr2f2
XM_043264253.1 mRNA downstream 979119 3372086 ~ 3380670 (+) True hsf4
XM_043263902.1 mRNA downstream 988055 3381022 ~ 3383654 (+) True nudt21
TU183022 other upstream 34792 2302526 ~ 2305578 (+) False plin1
TU182722 other upstream 338080 2001786 ~ 2002290 (+) True G123664
TU182587 other upstream 768439 1565426 ~ 1571931 (+) True G123568
XR_006253178.1 other upstream 1285635 1045211 ~ 1054735 (+) True tmem123
XR_006253179.1 other upstream 1292379 1045211 ~ 1047991 (+) False tmem123
TU183320 other downstream 1118999 3511966 ~ 3554690 (+) True tmem170a
XR_006253139.1 other downstream 1326921 3719888 ~ 3743756 (+) False nrn1la
XR_006246974.1 other downstream 2347901 4740868 ~ 4740965 (+) True LOC122323235
XR_006246980.1 other downstream 2348288 4741255 ~ 4741324 (+) True LOC122323241
XR_006246981.1 other downstream 2348587 4741554 ~ 4741651 (+) True LOC122323242

Expression Profile