RNA id: XM_043264009.1


Basic Information

Item Value
RNA id XM_043264009.1
length 3136
RNA type mRNA
GC content 0.44
exon number 15
gene id cfap45
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 372142 ~ 383071 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCCACTATTCACTGGCTGTAACCCTAGTAACTACGTCTCTATGGAAACGTCCACAACAAAACACTGCTGTAGTAACTGTGGTCAATACTCGTGTTACTTTCCATTATTTGAAGCGGTTCCTAAACACcgtttttaacagtatttatatCCCAGTCATAACGTCTGCCAGCTTTTTCACTAAAGCTCAAACAAAATGCCTCAAAGCGCCACGTCTTCATGTGGAAAGCAGTCGGGCAGCAGTGCTTTCACTCGACGCTATCGCACACGAGCCCTTACCTCTCATGTGGACGAGACCCTCTTTGGGACACCAAATCAGCATTCTGCTGGTGATATGAAAGACGACGCAGAAGGCGGAAGCGTGAGACTGAGGACGCGCTCTGCTCCTGCACCCGAAGAGCCACATTTAGAGACCGTGCGCATCATCACTAAAGACCTCATCAGGGATCTCAGAATCCCAAAAGAGGACCCATCTGGGCAATCTGTCATCCTGTCTTTGGCTGAATTCAGGCGAATCAAGGTAGAGTCTCATGTTCCTAGTGTGGAGGAGAAGGCAGCTGCACTCCAGACCCAACGCCAAGCCCGTGAAGAAGCAATGGATGCTGCAGAGCAGAGAAAAGCACAGATGCGTCAGGCGGACCTGTCTCGGCAAAAGAATCAGAACCTTAGTGAGCTTGAAGCAGAGGCAAGGGACCCTCAATACCTGTTGGAACGGGCGAACGCCCTAAGAATGGAACAAGAGGACGAAGTCAAGAAGCTTAATGAGTTAATTCAGCAAGTGCAGTGCCATGTTGTCCGAGATGCACAAATTCAGGAGAAGAAACAGAACCGTGCAGAGTggcaggaggaggagaaaagaCTGGATGCCATGATGGAAGTGGAGCGTCGCCGGGCCTTAGAAACACAGGAACAAATTGAACAGCTACAAAAGCAGCAAAGGATTGATGGGAAGATGTGTATCCTGGATCAGATCCAGATGCGTCTGGAGGAGAAAATGCTACAGGAGGAGTTGAAGGAACAGGAGGGTCAGCAATTGCTGGAAAACATGGAGAGGATGCAGATGGAGGAGCTCAAgGCCATTGAAAGAAAGCAGGAGGAGCAGAAGAATTTGCTTCAAGAGATTCAGAAGATAAATGAGGAGAATTTGCTCGCAAAGAGCAGAAAAAAAGAGGAGAGATTAGCAGATCTGCGAGCTGTAGAGTATACACGTAAGAAATTGGAACGTGAGGCAGAATATGAAGCTGAGCAGATACGAAtcaagaaagacaaagagaaagaagtgGCACGACTGAGAGCTCTTCAAGAAAGGGACAGAGACCATAAAGCTGAGCAGGATGAGATCAGGGCACGGAGGAACCAAGAAGCGGCTGCAAGGgaatggagaagaaaagaaaaagaacagacTCGGAGAAAGCTGGAAGTGGAAGAGAAGCTGAAGGCTGCTCGTCTGGAGCAGGTCACTCACAAGGAGCACATGCTGTCCATTGAAGCTGGGCGGAGAGCAGAGTTCGAGAGGGTCCTAAGGGCACAGCAGGAGCTCATTGAGAAAGAACGAGAAAAAGAGGAGCAACAGCATCAAAAAATCCAAAGGCACGCCGAAGCAGTGAGGCAGCAGGTACGGGAGAGAGAGGTGCAGGCCGTCACCCAGCGCAGAGAGCTGTTCCGAGAGGGTGAGCGGCTGGAAGAAGAGGCACGCAACCGCAGAGCACGCCTGGACGAGATTAAAGAAAAGAAGCTGAGGGAACTCAAGGCAGCTGGGCTCTCAGACAAGTACTACAAGGAAGTGGAGCGTAAGGTTCAACACCTTCCAGCTCTACTAAACTGAGAAATGGAAGAGATCGACATAAAGTACGTTTGTTGTCTGGCTTGACCCATGAACTCCCCACGTATATTTTGCCAGTGGATTTCTGGAAAAGATTGcatcaacattttaaaaggataaacaaaatacaaGTCAAGGCATGTATGGTTTGTGGTCTGTGGCTGACATAATAACTACTGTAACTCCAAGTATGCCAAAAGTGCACTGCTAAATCTTCTGACGAGATTGAAggacaaactaaaataattaaatacttcTGTAATCAAATATGAGctgttttgtaatataaaagaaCGGATGACAGGTGCTTTAATCATCACATAATCAATGACCCTCTCAAGTTTTCCATGGTCACATGACATCAAATGAACGCTTACATGGCTCCTATAGTACAGGTAAAATACTAATCACTACATGCTTTAGTAGGCAGAAGTAGActtcaaatgcaaatgtaatacaATTAAACACTATTCTTTTGAACAGTGTAAATTAGTTCTAAGAGGTTCCTATTGTACTATGTATAATACCTTCTAGTTGCATTCCCACAGAAAAGGTTTATGAAAGCCTCGGATCACAAATGTAACTGCTGTACCTTTTAATGTACTTTCCTTTTATGGGGCCTTTAGTTAAATTGAGATAAAAATGGGTACAGCATGACATAATACATAAGtcattatatacagtaaatgaacaacAACCCTGACTGTAAACCTGACTGTCTGAATAGCAAAGACAAATGTTTTAACTGGGTTTTTCAATATATCAACCTGTCTGTATCACAAATGAATCCAGGCAGAGGTGGAGGGCGAAATCAAACATGAGTTGTAATCGAATAAAAGATGAACAACATGGAACACACAAGAACATGGAAAGATATAAAACTGGTAAAAGAGTCTCTTCTAATGACTAGTGAAACAGAAGATGTGTGTAAGCTGGGtaataactgaaatattatcatgaaacactgttgacccatccctcaTACCTTAAAccaccctaaacctacccataccacctaATCTTACCTGTATTTAACCTCGATAGCAGTAAGtgttttgtaatacaatatgaacacggAGTAGTCAAGGCCACTTAATATGAAGTGGGACCATTgcaattctgtgtgtgtgtaagtcttGCTGTCTCTTCTTTAAACCCTACAGATAGTCACACCTACTGTTAAGCATTTTATAcgaaatgcattacaaaaatttttaatttgagctCTATCTTCATATctatctttaaattaaaatgtgaatactCACCACCCTGGGTCATATTACCatgaacaataaaattaaatgtggtGACCA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182105 lncRNA upstream 9106 361393 ~ 363036 (+) True G123257
TU182152 lncRNA downstream 81033 464104 ~ 476401 (+) True G123282
TU182153 lncRNA downstream 85167 468238 ~ 472130 (+) False G123282
TU182151 lncRNA downstream 91679 474750 ~ 476401 (+) False G123282
TU182176 lncRNA downstream 128227 511298 ~ 512632 (+) True G123301
TU182193 lncRNA downstream 146327 529398 ~ 529619 (+) True G123312
XM_043263917.1 mRNA upstream 17257 333483 ~ 354885 (+) True LOC122362472
XM_043216508.1 mRNA upstream 164016 207287 ~ 208126 (+) True LOC122322910
XM_043216507.1 mRNA upstream 166541 204768 ~ 205601 (+) True LOC122322909
XM_043264750.1 mRNA downstream 2393 385464 ~ 393966 (+) False tbrg1
XM_043264747.1 mRNA downstream 2415 385486 ~ 393966 (+) True tbrg1
XM_043264749.1 mRNA downstream 2415 385486 ~ 393966 (+) False tbrg1
XM_043264751.1 mRNA downstream 2415 385486 ~ 393966 (+) False tbrg1
XM_043264752.1 mRNA downstream 2415 385486 ~ 393966 (+) False tbrg1
TU182087 other upstream 263310 108369 ~ 108832 (+) True G123243
XR_006253182.1 other downstream 431693 814764 ~ 823177 (+) False LOC122362993
XR_006253178.1 other downstream 662140 1045211 ~ 1054735 (+) True tmem123
XR_006253179.1 other downstream 662140 1045211 ~ 1047991 (+) False tmem123
TU182587 other downstream 1182355 1565426 ~ 1571931 (+) True G123568
TU182722 other downstream 1618715 2001786 ~ 2002290 (+) True G123664

Expression Profile