RNA id: XM_043264022.1


Basic Information

Item Value
RNA id XM_043264022.1
length 2273
RNA type mRNA
GC content 0.40
exon number 9
gene id LOC122362532
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 11007590 ~ 11028729 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTAATTAGAACTGATGACTTTGTTCAGGTCCCCGGAGGGCGCTGGCACGTGTATAAAAGCTCCGGCGGTCGCGTTGGCGCGCGCAGTCTGGACTTCCACAGTGAGCGGGATCGGTGGGATTATAAACAACGACGAGGAGAACATGACAAACGCACAGGAAGCGACCCGGCGCGACGCCACGACTTCACACGCCGCTGCAGATGCAGTGAAGATTAGAAGAAGAAAGGCTCAGTGGCTGGTTTCAGGCATGTTAAGTCTGTCTTTGGTCATTGTTGTGATGGGTATCTACACCAGCACGCGCACTGAGAGCGTCACTGTCACAGGATACATGTCAGGAATTATTTTGGCGTTTGGATCATTCTTGGGAGTTCTTGGACTATGCCTAGAGGAAAACCGCAAGCAGCTGCTGATTGCAGCCATTGTGTTCCTGAGTTTTGGTATAATTTCCAGTTTCTTGTGTCTTGTGGTTGATGGCGTTTTCATCCTACTCAACATTGATATGCGTCCAATGAAGGCAGGAAGATGTCAGTTCTACACCAGTGGAAATAGTTACATCTATGAGAACTACTATGCTACAGTTCCCTGCCAAGGACTAACAGAGTCGTGTAATATGAAAGTCCGGAGTGGAACGTGTTATTGTTGTGATCTGTATGATTGTGCAAAtGGAGGATATCTGAACAATTACTATGAGTTTGTTGGTGTTCAGAGCTGTCAGGAGGTCCTCTCTCTGTACGTTCTCCTCTGGGTCCTGACCACGCTTAACCTGCTGGCCTTCGTGTGTGGAATCCTGACCACTGCTGTACTGGGAAGCATTAAAGACATGAAGAGTAGGGTGGTCGGTCTTGATGTCTCCCAGTGGGGAGGTTCATCTCTGTTCTCTTTTGATGGGGCCAGCTGTTCTTCCCCTACTGCACCCCTGCTGATAGACCCAAACTCACACACAGGACACCAGCTCTACCCGAGGACATCGCTTCATGTTTCTCCAGCAGCACCTGCTGCTGCAGGATCTAGTGCATCTCCAGGAGGATCATCAGATACATCCCATGCACAGCCCAACCCACCTCCCTTTGCCCCCCTTTACAACCTGCTACCCTACAAAACCTCCAGCTTCTCAGCTTAGAACACCTGAAtccaaataaaaagacatttagacTGCACTCTCCTTAAACTCAAcatgaaaatggactgtttactttctaaataaatgtcCTTGGTCTTATTGTGCAAGATTCATCAGAGCACGCTCTCAAGCAAATGGCTTGTTTtcataatctttcatcaaaatgctTTCTTCATCTCTGTGAAAACAATGGTGAAACAACGCCTTTTCTTTTTAGATGGGGAAAAATCAAAGCTAGataattgcatttttcagtttttcatgaCCCAGTCAACccttcactcttaaaaataaaggtgcttaaaaggttcttcacagtaGGGCCGTTTTCACCACTTTAGTTCCAGAACTAAACGTGCAGTACTAAAGTACTGAGACAAGAACCTTGTTTTCACAAAGagccttttgtgaaacagaaaggctCTTCagatattaaagtttttttatggaaccatttagatttagcacctttatttttaagagtattGATGGATGCATAAGGCTTTATGTATCCATCagtactcttaaaaataaagctctaCCTTGTTTTCTGGTGGATATTCGATTTCATTTATGAATAAGCCATATTATAGACATTTATTGAAGAAATGCAATGCTAATGCCattacatgttattttataaagGTCGTATAAGGGCAGTTCAGTAAATATCACCTAATCAAATAACTGGCTAATTTGAAAAACAGTAGCACAAGAGACTAATTACAATCTGATGTAGGCTGTTATTGAACTAACTTCTCAACAgaataatgttcattttcagcAATCTGATTAATTCTGCCATACTTTAAAATCACAGCTGTTAATTTAATTAGCTCGCTACAACTTTTGGTTTTCTTGAAgcactttttaaaagcaaaagattGGAACatactttcaaaatgtaatCTAGATGTTTGTATATGATGCGTTTCTTTTGATAAACAATTGTTGTAaggttttatatgtttttatacttACAAGCGTTACTttgatatatattgttttatacaaGTCTGTTTTTGTACAATCTCTgttaaaagttagttttttttataccaaaGTCAATGTACTTGGcagtaaaataacagttttaccCTCATAAGGCTATATTTTaaggctgaaaataaaaattggatGTTTTATCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185295 lncRNA upstream 87257 10898164 ~ 10920333 (+) False G125481
TU185294 lncRNA upstream 102028 10898164 ~ 10905562 (+) True G125481
XR_006253185.1 lncRNA upstream 157901 10845452 ~ 10849689 (+) True LOC122363043
TU185276 lncRNA upstream 220567 10785905 ~ 10787023 (+) True G125470
TU185218 lncRNA upstream 369542 10632477 ~ 10638048 (+) False sema6dl
TU185365 lncRNA downstream 205620 11234349 ~ 11237141 (+) True selenot1b
TU185379 lncRNA downstream 270274 11299003 ~ 11299260 (+) True G125540
XR_006253135.1 lncRNA downstream 278818 11307547 ~ 11309510 (+) False LOC122362586
XR_006253134.1 lncRNA downstream 278929 11307658 ~ 11309510 (+) True LOC122362586
TU185388 lncRNA downstream 314866 11343595 ~ 11344675 (+) False trpc6b
XM_043264842.1 mRNA upstream 110528 10889486 ~ 10897062 (+) True LOC122362997
XM_043264843.1 mRNA upstream 111716 10889486 ~ 10895874 (+) False LOC122362997
XM_043264838.1 mRNA upstream 118189 10884597 ~ 10889401 (+) True LOC122362995
XM_043264839.1 mRNA upstream 129754 10872315 ~ 10877836 (+) True LOC122362996
XM_043264840.1 mRNA upstream 129754 10872315 ~ 10877836 (+) False LOC122362996
XM_043264391.1 mRNA downstream 69625 11098354 ~ 11134641 (+) True trip12
XM_043264397.1 mRNA downstream 69625 11098354 ~ 11134641 (+) False trip12
XM_043264398.1 mRNA downstream 69625 11098354 ~ 11134641 (+) False trip12
XM_043264399.1 mRNA downstream 69625 11098354 ~ 11134641 (+) False trip12
XM_043264400.1 mRNA downstream 69625 11098354 ~ 11134641 (+) False trip12
TU185314 other upstream 37823 10968085 ~ 10969767 (+) True G125496
TU185257 other upstream 170314 10824974 ~ 10837276 (+) False G125461
TU185261 other upstream 170314 10824974 ~ 10837276 (+) True G125461
TU184804 other upstream 1642102 9359436 ~ 9365488 (+) True G125192
TU184604 other upstream 2470642 8176353 ~ 8536948 (+) True G125041
XR_006253172.1 other downstream 197386 11226115 ~ 11231714 (+) False ccnl1a
XR_006246968.1 other downstream 205602 11234331 ~ 11237147 (+) False selenot1b
TU185364 other downstream 205620 11234349 ~ 11237141 (+) False selenot1b
TU185801 other downstream 1780721 12809450 ~ 12822781 (+) True G125830
TU185810 other downstream 1851859 12880588 ~ 12884612 (+) True G125836

Expression Profile