RNA id: XM_043264072.1


Basic Information

Item Value
RNA id XM_043264072.1
length 1530
RNA type mRNA
GC content 0.49
exon number 5
gene id wnt2
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 4215421 ~ 4223120 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TACACACCACGCTCCGCGATGCTCTGACGCTCGACTCACTCGCGTCGCGTCACTCCAGAGGTTTCTGATCCGGGAGAGCGAACATCCGCCTCGGCGCTCGATGCACTCCgcgtttcatttatttgctgttaAACCGAAGACGAGTGCCTGAACGAATGAGTATCGATACAAATTTTAGAATATGAACTTTTTGCCAAGTGGAATATGTTTTTATCTGTCCGTGGCAATTTGCTGGTTCACATCAAGGGTCGACGCATCGTGGTGGTACATGGGCACTCTTGGATCGCAAGTGATGTGCGACAACATCCCGGGCTTAATTAACAAACAACGCCAGTTGTGCCGCCAGCATCCCAAGGTGATGCAGGCTATCGGAGCCGGAATTAAAAACTGGATCGGAGAATGTCAGCACCAGTTCAGAAACCACCGCTGGAATTGCAATACCATGGCGCGCGAGCACAATCTTTTCGGAAGGCTTTTGCATCGAAGCAGTCGCGAGGCCGCCTTTGTCTATGCCATTTCCTCAGCAGGTATGGTCTACACCTTGACCAGGGCCTGCAGTCAAGGTGAACTAGAAAACTGCTCCTGCGACCCTGGAAAAAAGGGCTCTTCTCGAGATGCCAAGGGAGCTTTCGACTGGGGTGGCTGCAGCGATCACGTTGACCATGCGATCAAGTTCACTCAGGTCTTCATAGACGCCAAGGAGAGGAAGGAGAGAGATGCACGAGCGCTCATGAACTTGCACAACAACCGTGCAGGGAGGAAGGCGGTGAAGCGCTTTATGAACCTTGAGTGTAAGTGTCATGGTGTCAGTGGCTCGTGCAATGTACGAACCTGCTGGTTAGCCATGGCAGACTTCAGGCAGACCGGTGACTATCTCCGCAAAAAGTACAACAATGCCATTCAGGTGGTGATGAACCAGTATGGAACCGGCTTCACTAGTGCCTACAGGATGTTCAAGAGGCCTACCAAAACTGACCTTGTCTATTTTGAAGACTCACCTGACTACTGTATATGGGACCATGATTCTGGTTCTGTGGGCACAGGTGGGCGAGTGTGCAACCGTACGTCGCGTGGGGCAGACAGCTGTGAGGTCATGTGTTGTGGGCGGGGCTATGACACGTCACGCGTGAGCCGCACCACCAAGTGTGAGTGCAAGTTCCACTGGTGTTGTGCTGTTCACTGCAGGGACTGCCAAGAGGAGGTAGATGTGCATACCTGCAAAACCCAGTCATGACCCCACCACCCCTGCACTTCGGTTACCTTCCAGAGTAAAGATCCCATCTCAAACCTTTGACATTGTAAACTGCTTTTCTGTTGCAAATTAGATCAAACACAGATGACCGGCAACTTTAAACCTATGCAGATTTGTCGCATCACAACTTTTTGAAGTCTTGTGTAGTTTTACTTGCTGTTTTTCTCCCATCGTAACACTCATATTTATTACAGCTTTGGAATGtttatctttaatgtatttcatattttgaacTGTAAATACAAACtctatgtaatttaaaataaaacgtatgtTAT

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0048794 swim bladder development biological_process
GO:0030182 neuron differentiation biological_process
GO:0045165 cell fate commitment biological_process
GO:0072574 hepatocyte proliferation biological_process
GO:0005615 extracellular space cellular_component
GO:0005109 frizzled binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183657 lncRNA upstream 31770 4182733 ~ 4183651 (+) True G124295
TU183656 lncRNA upstream 33030 4181385 ~ 4182391 (+) True G124294
TU183655 lncRNA upstream 34132 4180426 ~ 4181289 (+) True G124293
TU183654 lncRNA upstream 36065 4179040 ~ 4179356 (+) True G124292
TU183476 lncRNA upstream 79821 4135383 ~ 4135600 (+) True G124161
TU183831 lncRNA downstream 238725 4461845 ~ 4462124 (+) True G124427
TU183828 lncRNA downstream 253427 4476547 ~ 4477879 (+) True G124425
XR_006246939.1 lncRNA downstream 464914 4688034 ~ 4691944 (+) True LOC122323045
TU183914 lncRNA downstream 521640 4744760 ~ 4745307 (+) True G124497
TU183915 lncRNA downstream 522483 4745603 ~ 4745835 (+) True G124498
XM_043264070.1 mRNA upstream 1424 4200381 ~ 4213997 (+) False asz1
XM_043264071.1 mRNA upstream 1424 4200381 ~ 4213997 (+) True asz1
XM_043264536.1 mRNA upstream 38303 4136996 ~ 4177118 (+) False cttnbp2
XM_043264535.1 mRNA upstream 38303 4137004 ~ 4177118 (+) True cttnbp2
XM_043263942.1 mRNA upstream 91717 4114968 ~ 4123704 (+) True synm
XM_043265053.1 mRNA downstream 1660 4224780 ~ 4237212 (+) True bcl2l13
XM_043265052.1 mRNA downstream 1660 4224780 ~ 4237212 (+) False bcl2l13
XM_043265057.1 mRNA downstream 1660 4224780 ~ 4237212 (+) False bcl2l13
XM_043265051.1 mRNA downstream 1662 4224782 ~ 4237212 (+) False bcl2l13
XM_043265060.1 mRNA downstream 1677 4224797 ~ 4237212 (+) False bcl2l13
XR_006253139.1 other upstream 471665 3719888 ~ 3743756 (+) False nrn1la
TU183320 other upstream 660731 3511966 ~ 3554690 (+) True tmem170a
TU183022 other upstream 1909843 2302526 ~ 2305578 (+) False plin1
TU182722 other upstream 2213131 2001786 ~ 2002290 (+) True G123664
TU182587 other upstream 2643490 1565426 ~ 1571931 (+) True G123568
XR_006246974.1 other downstream 517748 4740868 ~ 4740965 (+) True LOC122323235
XR_006246980.1 other downstream 518135 4741255 ~ 4741324 (+) True LOC122323241
XR_006246981.1 other downstream 518434 4741554 ~ 4741651 (+) True LOC122323242
XR_006246975.1 other downstream 519187 4742307 ~ 4742435 (+) True LOC122323236
TU183924 other downstream 536517 4759637 ~ 4793251 (+) False LOC122322928

Expression Profile