Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_043264102.1 |
| length | 1373 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 4 |
| gene id | tsen34 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_056716.1 |
| NCBI id | CM032085.1 |
| chromosome length | 26409628 |
| location | 11237533 ~ 11240065 (+) |
| genome version | ASM1883169v1_2021_tiger_barb_Genome |
| species | tiger barb (Puntius tetrazona) |
| id | name | namespace |
|---|---|---|
| GO:0006388 | tRNA splicing, via endonucleolytic cleavage and ligation | biological_process |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0000213 | tRNA-intron endonuclease activity | molecular_function |
| id | description |
|---|---|
| K15323 | TSEN34; tRNA-splicing endonuclease subunit Sen34 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU185365 | lncRNA | upstream | 392 | 11234349 ~ 11237141 (+) | True | selenot1b |
| TU185293 | lncRNA | upstream | 193467 | 10936365 ~ 11044066 (+) | True | G125480 |
| TU185295 | lncRNA | upstream | 317200 | 10898164 ~ 10920333 (+) | False | G125481 |
| TU185294 | lncRNA | upstream | 331971 | 10898164 ~ 10905562 (+) | True | G125481 |
| XR_006253185.1 | lncRNA | upstream | 387844 | 10845452 ~ 10849689 (+) | True | LOC122363043 |
| TU185379 | lncRNA | downstream | 58938 | 11299003 ~ 11299260 (+) | True | G125540 |
| XR_006253135.1 | lncRNA | downstream | 67482 | 11307547 ~ 11309510 (+) | False | LOC122362586 |
| XR_006253134.1 | lncRNA | downstream | 67593 | 11307658 ~ 11309510 (+) | True | LOC122362586 |
| TU185388 | lncRNA | downstream | 103530 | 11343595 ~ 11344675 (+) | False | trpc6b |
| TU185644 | lncRNA | downstream | 663394 | 11903459 ~ 11903992 (+) | True | G125709 |
| XM_043216907.1 | mRNA | upstream | 386 | 11234331 ~ 11237147 (+) | False | selenot1b |
| XM_043264629.1 | mRNA | upstream | 3719 | 11226141 ~ 11233814 (+) | True | ccnl1a |
| XM_043264630.1 | mRNA | upstream | 5515 | 11226122 ~ 11232018 (+) | False | ccnl1a |
| XM_043264632.1 | mRNA | upstream | 5900 | 11226115 ~ 11231633 (+) | False | ccnl1a |
| XM_043264631.1 | mRNA | upstream | 6967 | 11226113 ~ 11230566 (+) | False | ccnl1a |
| XM_043264431.1 | mRNA | downstream | 562 | 11240627 ~ 11244692 (+) | True | bcl7bb |
| XM_043264427.1 | mRNA | downstream | 5256 | 11245321 ~ 11262070 (+) | False | baz1b |
| XM_043264430.1 | mRNA | downstream | 5256 | 11245321 ~ 11262070 (+) | False | baz1b |
| XM_043264426.1 | mRNA | downstream | 5257 | 11245322 ~ 11262070 (+) | True | baz1b |
| XM_043264428.1 | mRNA | downstream | 5257 | 11245322 ~ 11262070 (+) | False | baz1b |
| XR_006246968.1 | other | upstream | 386 | 11234331 ~ 11237147 (+) | False | selenot1b |
| TU185364 | other | upstream | 392 | 11234349 ~ 11237141 (+) | False | selenot1b |
| XR_006253172.1 | other | upstream | 5819 | 11226115 ~ 11231714 (+) | False | ccnl1a |
| TU185314 | other | upstream | 267766 | 10968085 ~ 10969767 (+) | True | G125496 |
| TU185257 | other | upstream | 400257 | 10824974 ~ 10837276 (+) | False | G125461 |
| TU185801 | other | downstream | 1569385 | 12809450 ~ 12822781 (+) | True | G125830 |
| TU185810 | other | downstream | 1640523 | 12880588 ~ 12884612 (+) | True | G125836 |
| XR_006246942.1 | other | downstream | 1677161 | 12917226 ~ 12925468 (+) | False | napab |
| XR_006246961.1 | other | downstream | 1706776 | 12946841 ~ 12955945 (+) | False | glb1l2 |
| XR_006253128.1 | other | downstream | 1976419 | 13216484 ~ 13218337 (+) | False | LOC122362547 |
