RNA id: XM_043264128.1


Basic Information

Item Value
RNA id XM_043264128.1
length 1887
RNA type mRNA
GC content 0.40
exon number 9
gene id paqr5a
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 4287447 ~ 4291461 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACGACAACAACAGATACATTTGCAAAACTAGACCACTTCTTTGACGGGCGTCGCGTTGCGCCTGTAGTGGGATAATTCAGCTTCTTGGATACGGAGCGTTCATGAGAGTATACTAGCCAATCACAGAAGCCCGGGGACCTACAGCTGACAACGAAAACAAAGAAAGGCATGTTTTTCCTCTCACTCTCTACTCGTTGTCGGGAGGGAAAAAATCAGACATTCACTGTATGTTGTTTATTCAGTTCGCACACACTCGAAACGTCGAAATACATCTGAAGGGAGGGGTTTTATAGAAAGATCCTGAGTTGGTGACTGGACTGTGAGATATCATACAGTACAGAAGAACGCTAAACAGAAGAAGTCCAAAACAATCACAGGGAATCAAGAAAATCTGTAGAAGGCTAATGGTCTCTCCACCTTGTGATTGCTGGACCCCTCTCTACTATGCTCAATCTCATCAAGCTACCTCAAGTGTTCACCATCAACCAAGTTCCAAaaGTCTTCCACGAGGATGGCATCATTTCAGGGTACCGCCACCCATGCAGCTCTGCCAAAGACTGTGTGCTTAGTCTTTTCCAGCTAACAAATGAAACCCTCAATATTTGGACTCATTTCCTGCCTTCGTGgTTTTTCTTATGGAAACTGACAGTAGTACTAGTGCAAGATGACTGGCAGGATCCTTTCAACTGGCCCTTGCTGATGTTCCTTTTGTCGTGCTGTGTGTACCCACTCGCTTCCAGCTGTGCTCATACCTTCAGTACCATGTCAGAGAGGGCCAGGCACATCTGCTTCTTCTTTGATTATGGAGCTCTCAGCTTCTACAGTCTTGGTTCTGCCATCATCTACTCTTCTTACTCATTTCCAGACAAATGGGTTAATAGCACATTTCACAAATACTATGTTCCTATAGCTGTTGTCAATTCTGTTATCTCCACTGCACTGGCATGCTACTCAAGACTTGGTTTGCCATTTTTTCAGTATAATTACCACAGCATTAAAAGTTGTTCTGGAAAATTAGATCAGAAACTGAGTAAATGTCTACGGATAATCGCCTTCGTCTATCCATATGTTTTTGACAACATCCCTCTCTTTTATAGAATCTGTGTGTGCACTGGTGAGGGTTGCACTGTTAATGAAGCCAATGCTGTTCACTATCAGCACACGTCACTGGCTGTTCTCACTGGCTTTCTTTTTGCCACACACCTGCCTGAACGCTTGGCTCCTGGCAGTTTTGACTACATAGGTCACAGTCATCAGCTCTTCCACGTGTTTGCTATTATTGGCACGTATTTCCAGATGACTGCCATTGAACTTGACATGGCTGCACGAAAGCAGTGGCTTCATGCTCATTTGCCACCAGTCACGCTTTCAGACACCGTGGGAGCTGTGTTATTTAGTGTGTTCAGCAGCCTTTGTATAGTATATGCCTTCAGTCTGGCACTTTTCTCCACTAGAGGTGTAAAggacaaattaatttgaattgtgACATTTGATGAGGTTACTTAGGGCAGCTAAGTTAGTTTCCCTTAAAACTaagtatattgtgtgtatatatgtgttaaaTGGCAGCAATTTCATGAAGATTTTATGTAAATTGGAAAAGTATAAGACTGTATAATTTATGATTGTTTTGTATTGATTCATGTTTTTGTACTGAGTGTCATTTTTCTCTACTTCTAATCACATGCTTGacattttcacaatttaaaagcacatttccaCGTTTTTGAAGCACATGAATCAAACTATATTATCATTGTTTTTACAAGTGCCTTTTTATAATCAGTCTTTTTGAAAACTGTTAAGTGTATAATCGTGGTGTttcttatgaaaaaaaaatcttgttaatatgtaacattttgttatttttacttaataaaactaTG

Function

GO:

id name namespace
GO:0048477 oogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005496 steroid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183657 lncRNA upstream 103798 4182733 ~ 4183651 (+) True G124295
TU183656 lncRNA upstream 105058 4181385 ~ 4182391 (+) True G124294
TU183655 lncRNA upstream 106160 4180426 ~ 4181289 (+) True G124293
TU183654 lncRNA upstream 108093 4179040 ~ 4179356 (+) True G124292
TU183476 lncRNA upstream 151849 4135383 ~ 4135600 (+) True G124161
TU183831 lncRNA downstream 170384 4461845 ~ 4462124 (+) True G124427
TU183828 lncRNA downstream 185086 4476547 ~ 4477879 (+) True G124425
XR_006246939.1 lncRNA downstream 396573 4688034 ~ 4691944 (+) True LOC122323045
TU183914 lncRNA downstream 453299 4744760 ~ 4745307 (+) True G124497
TU183915 lncRNA downstream 454142 4745603 ~ 4745835 (+) True G124498
XM_043265119.1 mRNA upstream 5512 4280090 ~ 4281937 (+) True LOC122363152
XM_043265039.1 mRNA upstream 23738 4257020 ~ 4263711 (+) True ighmbp2
XM_043265040.1 mRNA upstream 23738 4257020 ~ 4263711 (+) False ighmbp2
XM_043264761.1 mRNA upstream 34157 4246548 ~ 4253292 (+) False dennd11
XM_043216916.1 mRNA downstream 776 4292237 ~ 4301878 (+) True kif23
XM_043216918.1 mRNA downstream 776 4292237 ~ 4301878 (+) False kif23
XM_043216917.1 mRNA downstream 776 4292237 ~ 4301878 (+) False kif23
XM_043216919.1 mRNA downstream 776 4292237 ~ 4301878 (+) False kif23
XM_043264727.1 mRNA downstream 293728 4585189 ~ 4588702 (+) True aagab
XR_006253139.1 other upstream 543693 3719888 ~ 3743756 (+) False nrn1la
TU183320 other upstream 732759 3511966 ~ 3554690 (+) True tmem170a
TU183022 other upstream 1981871 2302526 ~ 2305578 (+) False plin1
TU182722 other upstream 2285159 2001786 ~ 2002290 (+) True G123664
TU182587 other upstream 2715518 1565426 ~ 1571931 (+) True G123568
XR_006246974.1 other downstream 449407 4740868 ~ 4740965 (+) True LOC122323235
XR_006246980.1 other downstream 449794 4741255 ~ 4741324 (+) True LOC122323241
XR_006246981.1 other downstream 450093 4741554 ~ 4741651 (+) True LOC122323242
XR_006246975.1 other downstream 450846 4742307 ~ 4742435 (+) True LOC122323236
TU183924 other downstream 468176 4759637 ~ 4793251 (+) False LOC122322928

Expression Profile