RNA id: XM_043264149.1


Basic Information

Item Value
RNA id XM_043264149.1
length 2452
RNA type mRNA
GC content 0.43
exon number 7
gene id syt19
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 3966372 ~ 3971101 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACAGTGTAAAAGTAAAGTAGTAAAGAAAGAGAGCAGTTCTACATGAAACGCATCGCATCCATCTTATGTTTCAGCTGTACATTCAAGACGTTAGATGACACAGATGAAGCTTGTTTAATAAGACCTGAAAGAACAAGTGATCAAACAGGTTTGCCCTTGTGTTTGCTGATCATCTGTCAGGTGATCGCTGTCAACTACGTCTCAATATGGATCCGCTCCGGTCGTAGTTTATCTCTCAAAATGGAATTAATAGAGGGAACTTAAAGCTTAAAAAGGTCTTTGCATGGCAGAAAGACATGATTTTCTTTGCCGTTTTGGGTCTGTCCTTCAGAGAAATTCAACTGTCGTTCTCAGAGGAATTGGAATATAGTATTTTGGGAATATCTTTTGTCCTTTTCCTCATAGCCCTATCCCTTTTGATATGGCAGATTTACCGCTACTGCACACGGCTCCCTGTTTCACAAAGACCTGaTGGCCTGTCGGCTCGGAGCGGAGGTTTTCAGTATGCTACACAAACAAGTGACGCTAAGATGGAGGTTCATTATGAGGAACTCAGCCACCGACTGTCCCCTGGCACCTCTTGCACGAACCTGGGGAGTAGTTTAGATCTAGCTAACATGGCAGATGTGGAAGAGGAGAACATCCAGGGATCTCTGCGCTTTTCACTGTTCTACGATCAGCTGCAGTCCAAACTGGTGGTGACGGTACTGGATGCCCAGGGTCTAGCCGTGCGAGACTTCAGTCACAGCGTGGACCCGTTTGTTTGGGTGCGGTTGCTGTgggcagagagagaggatgaggaGCAGAGTTCAAAGCAGTGTGTTCTGGAAGAATGGCAGACACGTCTAGTGAAGAAGAGCTGCAGTCCTGTGTTTGGAGATCAGTTTTCTTGCACTCTGGCTGAGGAGGAAGTACCAAGAGTCACTGTTAGATTTGAGGTTCGGGATTTCGATAAATACTCAAGACATGGAATTCTAGGAGAGGCCCGTGCTCCCCTGAACAGTCTGAAGCTCTCATATCCCCTGGAGTTAAGAGAGGATCTGAAAATACCCAAGAAAGATATGGTTGGTGAGGCACTGCTCTCTCTGAAATACATGCCTACATCTCAGAGGCTGGAGGTGGGAGTGTTGAAGATCCGCACAGTATGTCATCCCAATAAGACTGAGAGAGCTCTCTATGCCAAAACCAGTGTTACCTGCAACCACTGCAAACTTCGACATCAGAGGACAAAACAGAAGAAGCGTTGGGAGGTGACTGTGTTTAATGAGGTCCTGACCTTTGTGTTGCCAGATCAACAGATTAGAGAGTGCATCATTATAGTGTCCGTTTACGAAATTCAGCCTACAAAGAAGTCTTCCAAACGTTTGATTGGTAACATCCacatcaaaaaagtcaaaacctTCGAAAATGAGCACTGGAAACTGATGATGCAATCACTACGACAGCCAATCGCTAAGTGGCATTTAATCTTCATCTGAATACATCTTAAGTTTATTGACGCTTCCATTTCTAGATGCTTTCGACTTTTGTGTCTGTTCAAGgttagaagaaaataaaatgttacatttggtTGCTCACTGggtttaaaaacatgtacaacCCTGCTGGAAAAAAGGCTAAAACTAGGTTAAACTGATTGACTGATTTTAGCTGGTCAACCAGGCTGGTCTTAGCTTGTCATCTATGCTGAAAAACAGCAAATGTGGTTAGGTATATTttaaagctgggatgctggtttttGCTGGTCCTTTGTTGGGTTTTAAGCCAGTCAGACCATCCTTAGCACCAGCACAGGACctgcataaaccagcaaaggaccatcttaaacaagctcaaaccagcatcccagcttcaaaacatacctaactaGAATATGCTGGGGGTTTTTTCAACAGAGATAGCTGATCATCAGGCTGCTTTTAGAAAGGGTTTTGGCCAATTCTTTAGCTGGTCAGGCTGGTAAACCAGCTGGAACAACCTGCTAAAACCATCTTAACCAACCTAACCAGGCTGGGCGACCAGTTTAGGCtgtttttgagtttgtttttttttttcagcgggGAAAGGCAATATAGGTttattcgtttgtttgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttctttaactATGGTATGGACACTTCTGGCCCAGTAGGCTTAAAACTTTCACACTCTTAGACTActagtatttatttacaacCTGTATACAACAGTGATTAATTTATAAAGTTTGTCATTGTGTACAAACATCAGCAAAGGAAACTTTATGCCACTGTGTCATCTCAAACAATCTCAAACTGTGTTTAATGACTGTGCCTTTTACTATATTCTAAAAGCAAACGAGctgtatttacattatttacttaaattagAGATGTTTGGTAATgatgtacaataaaatatttaattcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183416 lncRNA upstream 72986 3869668 ~ 3893386 (+) True G124121
TU183400 lncRNA upstream 222620 3743477 ~ 3743752 (+) False nrn1la
TU183364 lncRNA upstream 343219 3622874 ~ 3623153 (+) True G124092
TU183311 lncRNA upstream 477456 3463911 ~ 3488916 (+) False G124046
TU183369 lncRNA downstream 137629 4108730 ~ 4109140 (+) True G124097
TU183367 lncRNA downstream 138325 4109426 ~ 4113057 (+) True G124095
TU183473 lncRNA downstream 155268 4126369 ~ 4126773 (+) True G124158
TU183475 lncRNA downstream 162977 4134078 ~ 4134586 (+) True G124160
TU183476 lncRNA downstream 164282 4135383 ~ 4135600 (+) True G124161
XM_043264719.1 mRNA upstream 303 3963266 ~ 3966069 (+) True si:dkey-12e7.4
XM_043264716.1 mRNA upstream 3218 3957085 ~ 3963154 (+) True got2a
XM_043264718.1 mRNA upstream 11912 3945863 ~ 3954460 (+) True calb2a
XM_043263950.1 mRNA upstream 27428 3933543 ~ 3938944 (+) False pnp6
XM_043263949.1 mRNA upstream 27428 3933546 ~ 3938944 (+) True pnp6
XM_043216751.1 mRNA downstream 31855 4002956 ~ 4005569 (+) True si:dkey-12e7.1
XM_043216712.1 mRNA downstream 36374 4007475 ~ 4014541 (+) True anpepa
XM_043264982.1 mRNA downstream 57137 4028238 ~ 4108198 (+) True igf1ra
XM_043263942.1 mRNA downstream 143867 4114968 ~ 4123704 (+) True synm
XM_043264536.1 mRNA downstream 165895 4136996 ~ 4177118 (+) False cttnbp2
XR_006253139.1 other upstream 222616 3719888 ~ 3743756 (+) False nrn1la
TU183320 other upstream 411682 3511966 ~ 3554690 (+) True tmem170a
TU183022 other upstream 1660794 2302526 ~ 2305578 (+) False plin1
TU182722 other upstream 1964082 2001786 ~ 2002290 (+) True G123664
TU182587 other upstream 2394441 1565426 ~ 1571931 (+) True G123568
XR_006246974.1 other downstream 769767 4740868 ~ 4740965 (+) True LOC122323235
XR_006246980.1 other downstream 770154 4741255 ~ 4741324 (+) True LOC122323241
XR_006246981.1 other downstream 770453 4741554 ~ 4741651 (+) True LOC122323242
XR_006246975.1 other downstream 771206 4742307 ~ 4742435 (+) True LOC122323236
TU183924 other downstream 788536 4759637 ~ 4793251 (+) False LOC122322928

Expression Profile