RNA id: XM_043264156.1


Basic Information

Item Value
RNA id XM_043264156.1
length 3722
RNA type mRNA
GC content 0.39
exon number 18
gene id slc28a1
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 1778613 ~ 1789240 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGACTATCAATCTGATAGCAACGTGCAAAGtgtcttaaataaaaacacattagtgtgtagttaattaatgataagATTTCCAAGTGGGCAGAGTATATATCCCAGCTCAAGGTTCAAGACCCAGCAGTTATCACAGAGAACGCAGAATGACGGACAAAGAAGATTTACAGTTGACAGCCGTCTCGTATGGGAATGAACAAGGTGTGGACAATCCAGCTTTTGTGAAGGAGGATAAACTAACAGATGACCTGAGTGACAGTGACAAAGAGGGGTCAGAGAAGGAGTCAAAATCATGCCTGAGCAAAGCATGCATACCCATCACGGCCACAGAGATCTTCTGCAAGACGCACTCCAAAATAATCAGATACATTGCTTTGGGAATACTTGCTGCTGGTTATTTGGCATACTTCATTGCTGCATGTTATTTAAACTTCCAGAGGGCAATTGCTTTGGTTGTCCTCACTTGTCTGGGGGTGTTTATCATTGTGTGTGAGTTGGTGAACAAGTACAAGGGTGACAGCATAAGGAGGTTCTTCAAGCCTGTGCAAAGGTGTTTCAAATCCAATGTCAGATGGATAAAGTGGGTTTTCATAGTAATTGTGGTGGGACTGCTGGTGGCATGGCTGGCAATTGACACACGAAAGCGCCCAGAGCAGCTCATCTCTTTTGGTGGTGTCTGTCTATTCATTATTGCCATATTTCTCTTCTCTGCACACAGAACCGCAGTGAGATGGAGGACAGTCTTCTGGGGACTTGGTTTACAGTTTGCCATTGGCCTGTTTATCATTAGGACAGAGCCTGGTCTTATAGCATTCGAATGGCTTGGAAAGCAAGTTCagatatttcTGGACTACACAAAAGCTGGTTCATCATTTGTGTTTGGAGACCTCATTGAAAACATATTTGCTTTCCAGGCTTTGCCTATAGTGGTGTTCTTCAGCAGTGTAATGTCAGTGCTTTACTACCTGGGTGTGATGCAGTGGATCATCTCAAAGATTTCCTGGGTAATGCAGGTAACGATGGGAACCTCCTCTACAGAGACTCTCAGTGTGGCAGGGAACATATTTGTTGGTCAgacagAAGCACCACTCTTAATTCGTCCTTATTTGAATGACATGACCAAATCTGAGATTCATGCTGTCATGACTGGAGGATTTGCCACCATTGCAGGAAGTGTTATGGGTGCATTCATCTCATTTGGGATTGATGCCTCGTCTTTGATTTCTGCATCAGTGATGGCTGCTCCATGTGCTTTAGCCATCTCCAAATTGTCCTACCcagaaactgaaaaaagcaAGTTCACATCTAAGGGTCAGATTAAAGTTGATGGCGGtggtGAACAGAATGTCTTGGAAGCTGTCAGCAGTGGCGCATCTGCATCGATAGGACTTGTGGCCAACATCGCTGCTAACTTGATTGCTTTCCTTGCCATTTTGGGGTTCATAAATGCTACTCTGAGATGGTTGGGAGGCATGGTGGGATACCCAGATGTCACTTTTGAGTTGATCTGCTCCTACGTGTTTATGCCGGTGGCCTTCATGATGGGAATTCCGTACGATGAGTCTTTTACAGTGGCTGAACTTATTGGCACTAAACTCTTCCTCAATGAGTTTATAGCCTATGAGAAGCTGTCAGAGCTGAAGAGCAACAGACTTAATGCCATGTTAGAAGATGGCGTAGATAAAAATTGGATCTCAGTGCGATCAGAAATCATCTGCACCTATGCACTGTGTGGCTTTGCTAATTTCAGCTCTCTTGGTATTGTGATTGGAGGCCTGTCCTCTATTTGTCCACCAAAGAAGGGTGTCATATCTACTTTAGTACTCAGAGCCTTGTTCACAGGCACTTGTGTTTCCCTGATCAATGCCTGTATTGCTGGTATACTTTTCGTTCCTCCGTTGGACTGTGTGGATCTGTTTAGAAGTGCACAGTTCAATACCACGACACCCAACGTTGAAACCTGCTGTTATGATCTTTTCAAAAGcaCTGTCAACAATGGAACAATTTCTTTTGAGGGGTCCTGGAGCGGAGTGAAAAATGCGACAATTTATTTTGCAAACTGCTGTGGTCTCTATGTGGAACCTGTTTGTCTGTAGCTTCACTAGAAGGTAACAATacaacaatgcagaaaacctcTGAACTAAATATAAtggcattatttattaaattcacacattttgaaatgtatgttAAGTTAATATATGTCTGCGCAGagtatgattttatttggtcataatttttttttatagatgttGCACAGTGTGTGcaagtattttaatttacttcaaTTTGTGTTATTCTGTCTTCTGTAAATGTTATAATCATTTTCAATCTTATcaaacatattcatattcataaatatcAAGACATTGTGCTctgcagtgtttcattttggcAGTTATGCTGGAAATGCTGCGAAAATATTGCATTACAGGAGTAAAGCATAACTAATAAGGGCCAAAGGGCTCTTTTATGAGGCAAGCAGTTTTTAAGATATAAAGCAGTGCACTCTGCCTTCGGATGGTAAAATGAGTTAAAGAAGTTTCTGCtgctttttacatatttattttacaaaagcaagtAACACAACGCAGCAGAAACACCTACAATGCTCATCCCTACAAGCATACTGAATATATTCTCTCTCTACAGTTCATATagttttttataatacaaaccCATACACGGACCTATCTTATCACATCTCACCACTATCTGTGGCAGCCTGGCATCTGAAAAAGTACTCCATGGTTAGTTTACGCAGTCAGCATGAAccttttttgctaaataatggTTACAAAGTCTTGTGAATGAGTTAAAAGTTTAGTTATTCTACATGaagatacatttcaaaatatgaaaaccTGCAAACATTGAGCATTAAAGGGTTTGGAGTAAGatttcttaaatatgttttgaaagTAGTCTCTTATTCTCACAAAGGCTTTATTTcgttaaaaacacagcaaaaataagttagatattttaatatattttaaaatgtattcctatgatggcaaagttgaatttttcgtcttgtgctgcttaatattttgtttataattataactGTGGTCATTTTTATCAGAATTCTTtcataaatagaaatgtaaaaagtacAGCATTATCTGTTGTAACAGTGTAAATTCCTTTACTGTCTCTTTTGGTCGATTTAATGTATCTTggctaaataaaactattaatatcTGACCCCACACTTTTCACTGATagtgtaaaatatgtatataatccATTTGTGTGAAGTTGAATGGTTCTAGAGATAGATGACGCATGAACAGTCTGAAAGGTCAGTAGTAAATGGCTTTACTGTGACAATAAagcacatgatttttttttccctcttctaGGAGACACATTtaagataaaaacacatttgcactgATTGACACTAATACTTTGCCCATATACAACCAATATCGGTGCACTGGCGTTTCTTAGATTAACGGCCATTTCCTTAAAAGCAGAACAATCCACTATAAAAAGCACCTCAGCAACAGCTACGgaaaaaagctgcatttctaCACAGCTGAGACACGTACATCACAGATGTTTGAGGAATCCTTGAAGAGTCCCTCTATCACGGTTCTTCAGTCATATAAACTTGACATAGGGacatttgaataaatcataacaAAGTTCCAGAGTCTATCTGAAAACATTGTTCTTCTGTCTACAGGCAGCCGGGTTTAGCATTTTTCTT

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component
GO:0005415 nucleoside molecular_function
GO:0001882 nucleoside binding molecular_function

KEGG:

id description
K11536 SLC28A; pyrimidine nucleoside transport protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182662 lncRNA upstream 18744 1758294 ~ 1759869 (+) False G123622
TU182663 lncRNA upstream 18784 1758245 ~ 1759829 (+) True G123622
TU182598 lncRNA upstream 39481 1693116 ~ 1739132 (+) True G123576
TU182631 lncRNA upstream 159188 1616143 ~ 1619425 (+) True G123599
TU182613 lncRNA upstream 188326 1588754 ~ 1590287 (+) True G123587
TU182693 lncRNA downstream 69768 1859008 ~ 1918466 (+) True G123642
TU182694 lncRNA downstream 130597 1919837 ~ 1920891 (+) True G123643
XR_006246962.1 lncRNA downstream 265280 2054520 ~ 2061225 (+) True LOC122323174
TU182978 lncRNA downstream 449673 2238913 ~ 2240259 (+) False LOC122363059
XR_006246969.1 lncRNA downstream 533349 2322589 ~ 2331573 (+) False LOC122323220
XM_043216693.1 mRNA upstream 21928 1755660 ~ 1756685 (+) True ch25hl1.1
XM_043216757.1 mRNA upstream 23715 1747275 ~ 1754898 (+) True si:dkey-24l11.2
XM_043216654.1 mRNA upstream 42230 1726239 ~ 1736383 (+) True pstpip1a
XM_043264157.1 mRNA downstream 13121 1802361 ~ 1815297 (+) True malt3
XM_043216679.1 mRNA downstream 27162 1816402 ~ 1907583 (+) False LOC122323046
XM_043216678.1 mRNA downstream 27174 1816414 ~ 1907583 (+) False LOC122323046
XM_043216677.1 mRNA downstream 27177 1816417 ~ 1907583 (+) True LOC122323046
XM_043216680.1 mRNA downstream 92193 1881433 ~ 1907583 (+) False LOC122323046
TU182587 other upstream 206682 1565426 ~ 1571931 (+) True G123568
XR_006253178.1 other upstream 723878 1045211 ~ 1054735 (+) True tmem123
XR_006253179.1 other upstream 730622 1045211 ~ 1047991 (+) False tmem123
XR_006253182.1 other upstream 955436 814764 ~ 823177 (+) False LOC122362993
TU182087 other upstream 1669781 108369 ~ 108832 (+) True G123243
TU182722 other downstream 212546 2001786 ~ 2002290 (+) True G123664
TU183022 other downstream 513286 2302526 ~ 2305578 (+) False plin1
TU183320 other downstream 1722726 3511966 ~ 3554690 (+) True tmem170a
XR_006253139.1 other downstream 1930648 3719888 ~ 3743756 (+) False nrn1la
XR_006246974.1 other downstream 2951628 4740868 ~ 4740965 (+) True LOC122323235

Expression Profile