RNA id: XM_043264293.1


Basic Information

Item Value
RNA id XM_043264293.1
length 546
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC122362721
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 7088818 ~ 7090566 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGCTGGCCTCACAAAGAAGAAAGGAGGCGACAGATGTGAAAGACACCGCTGAGATGGTGAAGGAAGCCTTGCAACAGGCCAGCGCTGACATCAAGGGAATACAAGACCTGCTGCTAAAACTGAGTAACACCACTCGAAGGCTGCTGAAGTTGGAAAGCGATGTAgctttgctgaaagaaaaggcaCTCAACACCTCCACCAGCACGGAGAAAGAGGCAGACAGCATCAAGGCACTTGCTGAGAAGCTCAAAAAGGATCTGGATTCAGAGCTGAAGGACAAGTACAGTAGTGTCGAGGAGGTGatcacacagaaagcagaagGAGTGGCAGAGGCcaagaaaagagcagagaaactCCAACAGGAAGCCAAAACTCTGCTGCTACAGGCCAGCGACAAACTCCAGCTGCTAAAAAatCTTGAGAAGAACTATGATGAAGATCAGAAGCTGCTGGAGGACAAGGCCAATGAACTGGTGGATCTGGAGAAGGCTGTGAAAGAACTGCTTCAGGAgatcagtcacaaagtcaccGTCTACAGCACCTGA

Function

GO:

id name namespace
GO:1902017 regulation of cilium assembly biological_process
GO:0007517 muscle organ development biological_process
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0007634 optokinetic behavior biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184423 lncRNA upstream 29221 7059351 ~ 7059597 (+) True G124907
TU184420 lncRNA upstream 33045 7055392 ~ 7055773 (+) True G124904
TU184418 lncRNA upstream 54151 7034443 ~ 7034667 (+) True G124902
TU184388 lncRNA upstream 147716 6940759 ~ 6941102 (+) True G124877
TU184378 lncRNA upstream 160278 6928327 ~ 6928540 (+) True G124867
TU184429 lncRNA downstream 81453 7172019 ~ 7172434 (+) True G124913
TU184474 lncRNA downstream 226656 7317222 ~ 7319011 (+) True LOC122323033
XR_006246936.1 lncRNA downstream 227116 7317682 ~ 7317897 (+) False LOC122323033
XR_006253137.1 lncRNA downstream 263934 7354500 ~ 7355149 (+) True LOC122362591
XR_006246941.1 lncRNA downstream 478493 7569059 ~ 7572136 (+) True LOC122323061
XM_043264462.1 mRNA upstream 69769 6961115 ~ 7019049 (+) False def8
XM_043264463.1 mRNA upstream 69769 6961115 ~ 7019049 (+) True def8
XM_043264467.1 mRNA upstream 69769 6961116 ~ 7019049 (+) False def8
XM_043264461.1 mRNA upstream 69769 6961116 ~ 7019049 (+) False def8
XM_043264464.1 mRNA upstream 69769 6961116 ~ 7019049 (+) False def8
XM_043264297.1 mRNA downstream 755434 7846000 ~ 7848851 (+) True LOC122362727
XM_043264936.1 mRNA downstream 899967 7990533 ~ 7994775 (+) True emc8
XM_043264620.1 mRNA downstream 905006 7995572 ~ 8005861 (+) False gins2
XM_043264659.1 mRNA downstream 1052933 8143499 ~ 8168224 (+) False si:ch211-220f16.2
XM_043264655.1 mRNA downstream 1052933 8143499 ~ 8168224 (+) True si:ch211-220f16.2
TU184395 other upstream 61683 7026318 ~ 7027135 (+) True G124881
TU184202 other upstream 547911 6539247 ~ 6540907 (+) True G124727
TU184178 other upstream 796893 6291491 ~ 6291925 (+) True G124707
TU184110 other upstream 1109536 5976210 ~ 5979282 (+) True G124661
TU184051 other upstream 1459165 5623453 ~ 5629653 (+) True G124612
TU184430 other downstream 82060 7172626 ~ 7173020 (+) True G124914
TU184436 other downstream 87273 7177839 ~ 7178276 (+) True G124920
TU184604 other downstream 1085787 8176353 ~ 8536948 (+) True G125041
TU184804 other downstream 2268870 9359436 ~ 9365488 (+) True G125192
TU185257 other downstream 3734408 10824974 ~ 10837276 (+) False G125461

Expression Profile