RNA id: XM_043264362.1


Basic Information

Item Value
RNA id XM_043264362.1
length 2267
RNA type mRNA
GC content 0.52
exon number 12
gene id ap2m1b
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 13501705 ~ 13514695 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGAGGAAGGGAGCAGCGGCGACATCTTGGATTCGCGAGTGAACGGTGACCGCAGCCTCAAACGCCGAATACGCGGAATAACACCGAGCCTCGGTCGGAACCGGACGCGCCTGCCTCTATCGAGTCGGTCCGGTCCGGTCCGGAGGGACGCACAGAGACTGACGCGCAGAGttttccaACATGGCTCGTGTGCACTGAGTGAGACCACCACCATGATCGGAGGACTCTTCATCTACAACCACAAGGGCGAGGTGCTGATCTCCCGCGTCTACCGCGATGACATCGGGAGGAATGCGGTGGATGCGTTCCGTGTGAACGTGATCCACGCCCGTCAGCAGGTACGCTCGCCCGTCACCAACATCGCCCGCACCAGCTTCTTCCACGTCAAGCGCTCCAACATCTGGCTGGCTGCCGTCACCAAGCAGAATGTCAACGCAGCCATGGTCTTCGAGTTCCTCTATAAGATGTGTGACGTCATGACCGCCTATTTCGGCAAGATCAGCGAGGAGAACATCAAGAACAACTTTGTGTTGATCTACGAGCTTCTCGACGAGATCCTGGATTTTGGGTACCCCCAGAACTCTGAGACCGGAGCACTGAAGACTTTCATTACTCAACAGGGTATTAAGAGCCAGACGAAAGAGGAGCAGTCTCAGATTACCAGTCAGGTCACCGGACAGATTGGCTGGAGACGCGAGGGCATCAAATATCGCCGCAACGAACTCTTCCTGGACGTGCTGGAAAGTGTGAACTTGCTGATGTCACCGCAGGGTCAGGTGTTGAGTGCGCACGTCTCGGGCCGTGTGGTGATGAAGAGCTACCTGAGCGGAATGCCAGAGTGCAAGTTCGGCATGAACGACAAGATTGTCATCGACAAGCAGGGCAAAGGTGGCACGACTGATGACTCGGGCAAAAGTGAGTTGGGGGGCAGCGGGAAACAGTCCATTGCGATCGATGACTGCACATTCCATCAGTGTGTCCGTCTCAGCAAGTTTGACTCGGAGCGCAGTATTAGCTTCATCCCTCCCGATGGAGAGTATGAGCTCATGAGGTACCGCACAACTAAAGACATCATCCTCCCCTTCCGCGTCATCCCATTGGTCCGTGAGGTGGGCCGCACCAAGCTGGAGGTAAAGGTGGTGATCAAGTCCAACTTCAAGCCCTCCCTGCTAGCACAGAAGATCGAGGTGCGCATTCCTACTCCGCTCAACACCAGTGGGGTTCAGGTCATCTGTATGAAGGGAAAAGCCAAGTACAAAGCCAGTGAGAACGCCATTGTTTGGAAGATCAAGCGAATGGCTGGTATGAAGGAATCTCAGATCAGTGCCGAGATTGAGCTGCTACCCACTAATGACAAAAAGAAGTGGGCTCGCCCACCCATCTCCATGAACTTTGAGgTACCGTTCGCTCCATCAGGACTGAAAGTGCGCTACCTGAAGGTCTTCGAGCCAAAGCTCAACTACAGCGATCACGATGTCATCAAATGGGTGCGTTACATCGGTCGCAGCGGCATCTACGAGACCCGCTGCTAACAGCAGCCCTTCCTGTGAGGAGGGGGAGAGACGCAGACGGGTAAACGGGTGGGATGAACAGAGGACGAAGAGAATGGAGTTATTCATTGTCTCGCTCTCCCCTCCTTTCCTCAACTTTTTATATGGGGCTCCATTCACGCCGAAAACATCAACAAAGGGAAACCCAAAAAAAGAACATCCAAAACATCATGAATTCAAACAAATGCccttcagaataaaaaaacgtaGTTTATCTGCAATGAAGGAAATTGTTTATGCTCGTCAACTCCCTTCAGAATTTCACTTGCTATGAGATGAGATGTAAACCCCCACTCGTTTCTCCTTTCTAATTCTTCCACAACATGCATTCCAGGCCCCCAGTCCCTATTGAATCCCAGCTAATTCGAGGCTCGGGCCCCTTTTCAAGCCGGTGATTAGCGCTGAACCTGCGTTTCTGCTCACAGTGTGGCCATTTCCGGCTCCTAACCTGGACCCTGAAAACGCACCCCTTCATGCTTCGTTTTTGTAGTGGTCCCTCCTAAAAGTATTTAGTTAGGTATCGTCCACTTTCTTGTTCTCAGTGAATTAGTGTAAACGTTAAACCAGTGGCCCCACAATGTTCTTGAGCGTAACTCTTCAGTGTCCATCCAAAGTTTCACGTACGCTGACGTTACCATTTGGATTTTGTCTTAATTTCTTTCTTGTCTCGATATAAAAGAATTTCTCAATGTGACCAAAATGAGGTGCGAGGACGTT

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030131 clathrin adaptor complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185895 lncRNA upstream 130924 13369713 ~ 13370781 (+) True G125887
TU185894 lncRNA upstream 132194 13367416 ~ 13369511 (+) True G125886
TU185889 lncRNA upstream 149975 13350491 ~ 13351730 (+) True G125881
TU185887 lncRNA upstream 154768 13346678 ~ 13346937 (+) True G125879
TU185885 lncRNA upstream 162639 13337754 ~ 13339066 (+) True G125877
TU186228 lncRNA downstream 28558 13543253 ~ 13543775 (+) True G126098
XR_006246953.1 lncRNA downstream 97364 13612059 ~ 13692558 (+) False LOC122323141
XR_006246954.1 lncRNA downstream 117381 13632076 ~ 13693855 (+) False LOC122323141
XR_006246952.1 lncRNA downstream 117381 13632076 ~ 13692558 (+) True LOC122323141
XR_006246951.1 lncRNA downstream 117381 13632076 ~ 13692558 (+) False LOC122323141
XM_043216485.1 mRNA upstream 2705 13471097 ~ 13499000 (+) False LOC122322886
XM_043216484.1 mRNA upstream 2705 13471098 ~ 13499000 (+) True LOC122322886
XM_043264683.1 mRNA upstream 32384 13458970 ~ 13469321 (+) False rnpepl1
XM_043264682.1 mRNA upstream 32384 13458971 ~ 13469321 (+) False rnpepl1
XM_043264681.1 mRNA upstream 32384 13458976 ~ 13469321 (+) True rnpepl1
XM_043263910.1 mRNA downstream 4372 13519067 ~ 13525306 (+) True mmp23bb
XM_043216805.1 mRNA downstream 77121 13591816 ~ 13594149 (+) True blvrb
XM_043216806.1 mRNA downstream 77244 13591939 ~ 13594149 (+) False blvrb
XM_043216803.1 mRNA downstream 79607 13594302 ~ 13597214 (+) True sertad3
XM_043216801.1 mRNA downstream 180428 13695123 ~ 13704727 (+) True daw1
TU185911 other upstream 70940 13427097 ~ 13430765 (+) False rpl35a
XR_006253129.1 other upstream 283359 13216657 ~ 13218346 (+) False LOC122362547
XR_006253128.1 other upstream 283368 13216484 ~ 13218337 (+) False LOC122362547
XR_006246961.1 other upstream 545760 12946841 ~ 12955945 (+) False glb1l2
XR_006246942.1 other upstream 576237 12917226 ~ 12925468 (+) False napab
TU186277 other downstream 164350 13679045 ~ 13682571 (+) True G126132
TU186336 other downstream 394869 13909564 ~ 13912800 (+) True G126175
TU186297 other downstream 425400 13940095 ~ 13941369 (+) True G126146
TU186575 other downstream 1312186 14826881 ~ 14828292 (+) True gemin7
TU186588 other downstream 1392572 14907267 ~ 14908483 (+) False LOC122322993

Expression Profile