RNA id: XM_043264398.1


Basic Information

Item Value
RNA id XM_043264398.1
length 8027
RNA type mRNA
GC content 0.51
exon number 43
gene id trip12
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 11098354 ~ 11134641 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGGAAGCACCGAGAGCTGTGGGAGCGGAGGTGATGCGGCAGTTCGCAGGTCGCTCAGCTGATGAAGGtaaagctgctgctgctgcactgTGTCTAACAGCTACTacaacactggaacaaatagGCTGCTGGTTGGGGCATTTGCACACGGCTGTGAATGGTAGTGTCTAGAAAGGGTATGTCCCTTCAGGAGAGAGGTGCCAATGTCCAACCGGCCTAATTCCAATCCAGGGGGGTCACTGCGCCGTTCACAGAGGAACACAGCCGCGGCCCAGCCACTAGACCACACACTTGCAGGAAGGTTGCAGCCAGAGCAAGTAAACCAAAAAGCAAATTCCCCACCTGAAAATAGAAGATCTAATTCTAAGGCTTCCAAAGCCCCGCCCAGCTCTGCCGTCGGCTCGGCCCGCGGCCACGCCTCTCGAAGgaaCAGCCTCTCTCTATCCGTGGGTTCACACTCGATTCCAGATCCAGAGTTGGAAGCAGCAGGGACTTCTGGCCAGCAGGGGAGACGGGAGGGCAGCAGCACCCGTGCTCTCAAACGCAGCTCAGCTTCAGAGCCCAACATCACCTTTTCACCCAGCCCGGCCAAACGGCCAAAAGCAGTGTCCAGTCACCTTTTGGAGAGTTCATCCAGTGGGCCATCGGCCCCCACAACCTCACCTGAAGTTACAGAGCCGAGAAAGGCTCCAGCGTCAGTCAGCACCAAGTCCAAAAAGAGACGGTTAGCAGCCGAGCCGGCTCCCGCCAGAGCCCTGAGCAAGAAGAGCGCATCCTACCCTGGCCCCAGTGGGGCCTCAAGCACCCCTTCTCAAAAGCGTAAGAAGGCAGAGGCCTCTTCGTTgtcatcctcctcttcttcctccctCCTCAGCTCAAGCAGCGCGGCAGGCCCCCTGCCACCCCGCAGCGAGGCCAGCCGGGCAGCCAAACCCACCAAGCTGGCGTCCAAATCGGCCGCCTCAGCCAAAGCTGGGTGTAGCACCGTGACTgactcctcctcttcctctgcctcttcctcatcctcctcttcctcttcctcctcggCCGCCACAGGCGCCAACAGCTGTGCCCCTCAGGGTGCCCGGCTAAAACAGGGCAAGGACCAGAGCAAAGCGCGACGGTCGCGCTCTGCATCCTCCCCTTCTCCCAGAAGGAGCAGCCGGGATAAAGAGCAGAGCAAGGCTGCTAGCTCCTCCAAGTTTGACTGGACATCTCGCTTCAACTCCAAAGTCAACCTGCCAAAGCCCAAACTGTCCCTGCCGGGATCGGCCAAGGCCGAGACCTCCTCCAAGCCTGGGCCCTCCGGACTGCAGGCCAAACTAGCAAGTTTGAGGAAGTCCACAAAGAAGCGTAGTGAGTCTCCCCCAGCAGAGCTCCCCAGCTGTCGGAGGAGCACACGTCAGAAGACCACGGGCTCTTGCGCCAGCACCAGtCGGCGAGGCTCAGGCCTGGGCAAGCGCGGAGCAGCCGAATCTCGCCGACAGGAGAAAATGGCCGACTCCGACAACAACCAGGATGGGGCCAATTCATCGGCCGCGCGCACAGAGGAGACTCCACAAGGGGCGTCAGCGTCTAGTTCAGTGGCTGGAGCTGTTGGCATGACCACCTCTGGAGAGAGTGAATCAGATGACTCTGAAATGGGTAGACTGCAAGCTCTATTGGAGGCCAGGGGCCTTCCTCCTCACCTGTTTGGCCCATTTGGGCCCCGTATGTCTCAGCTGTTTCATAGGACCATTGGGAGCGGAGCTAGCTCAAAGGCACAACAGCTGCTGCAGGGGCTTCAGGCTACAGGAGACGAATCCCAGCAGCTCCAGGCTGTTATAGAGATGTGCCAGCTGCTAGTGATGGGTAATGAGGAGACGCTGGGAGGATTCCCTGTCAAGAGCGTTGTACCTGCCCTGATCACACTATTACAGATGGAGCATAATTTTGATATTATGAATCATGCATCTCGCGCCCTTACCTACATGATGGAAGCACTGCCTCGCTCCTCGGCTGTGGTGGTAGACGCCATCCCTGTCTTCCTGGAAAAGCTTCAGGTAATACAGTTTATTGACGTGGCAGAGCAAGCTTTGACCGCCCTAGAGATGTTGTCACGGAGGCACAACAAAGCCATCTTGCAGGCTGGAGGTCTAGCTGCATGCTTGCTGTACTTGGAGTTCTTCAGCATCAATGCTCAGAGGAACGCATTAGCCATCGCTGCTAACTGCTGCCAGAGCATCACGCCGGACGAATTTCACTTTGTGGCTGATTCTCTGCCCCTGCTCACTCAGAGACTCACACACCAGgatAAAAAATCTGTGGAAAGCACTTGTCTCTGTTTTGCCAGGCTGGTGGACAACTTTCAGCATGAGGAGAACCTGTTACAGCAGGTGGCGTCACGGGACCTGCTGACCAACATCCAGCAGCTGCTGGTGCTCACTCCACCCGTGCTCAGCTCCGGCATGTTCATCATGGTAGTGCGCATGTTCTCTCTCATGTGCTCCAACTGTCCGTGCTTGGCTGTGCAGCTCATGAAACAGAataTAGCAGAGACCCTGCGTTTCCTGCTCTGTGGCGCATCTAATGGGAGCTGTCAAGAGCAGATCGACCTCGTTCCCAGAAGCCCCCAGGAGCTTTATGAACTCACCTCACTCATCTGTGAGCTGATGCCATGTCTGCCCAGAGAGGGCATCTTTGCGGTTGATGCCATGTTAAAGAAAGGCAGCGCTCAGACCACAGAGGGCGCCATCTGGCAGTGGAGAGATGACAGAGGCCTGTGGCACCCGTACAACCGCATTGACAGCCGCATCATTGAAACTGCACACCAGAATGGAGAAGACGAGATAAGTCTGTCGACACTCGGCCGTGTCTACACCATCGACTTCAACTCTATGCAGCAGATAAATGAAGACACTGGCACTGCTCGTGCCATTCAGAGAAAGCCCAACCCTCTGGCCAACCCCAACACAGGAGGGCACTTGGAGGTGCGTCGAGAAGACGCACGCGCTCAGCTGATGAAGGAGGATCCTGAGCTGGCCAAGTGCTTCATAAAGACTCTGTTTGGGGTTCTGTATGAGGTGTACAGCTCCTCAGCTGGGCCTGCTGTCAGACACAAGTGCCTTAGAGCCATCCTCCGGATCATCTACTTTGCAGATGCAGAGCTGCTTAAAGACGTACTGCGCAACCACGCTGTGTCAAGCCACATAGCTTCCATGCTGTCCAGTCAGGACCTGAAGATTGTAGTGGGCTCTCTGCAGATGGCCGAGATCCTCATGCAGAAGCTTCCAGATGTGTTCAGTGTTTATTTCAGGCGGGAAGGTGTTATGCACCAGGTAAAGAACCTCGCTGAATCCGAGGTGTTCCTCACCAGCCCTCCGAAAGCGTGCACCAGCGGCACAGCTAGTCTTTGcaccaccaccatcaccacAGCAACCACTACAGCTGCTTCTAACGTCACACCCGACCTGGGCTCCCCCAGTTTCCAGCACAGTATGGACGATTCGCTGGACCTCAGTCCTCAGGGGTTGAGTGATGTTCTGAAAAGAAAGCGCCTTCCTAAAAGAGGACCAAGGCGTCCCAAGTACTCTCCACCCAGAGATGATGACAAAGTGGATAATCAGGCTAAGAGTCCTACAACCACACAGTCCCCCAAGTCCTCTTTCCTGGCCAGTTTGAATCCCAAGACCTGGGGTAAGCTGGGGACTCAGACAAACAGCTCCAACTCAGAGCCCTCGCGTACTGCAGGGGTCAGTGGTCTGGCACGAGTGCCACCCAAGGACTCGGTTTCAAACAACAGGGATAAGATAAAGGCTTGGATAAAAGAACAAGCCAGTAAGTTTGTGGAGCGTTACTTTAATTCTGAGAGCGTGGATGGAAGCAACCCTGCATTGAACGTCCTGCAAAGACTCTGTACTGCCACAGAGCAGCTGAATTTGCAGGTTGACAGTGGTGTAGAGTGTCTAGAGGAGATAAGCAGTATTGTATCTGAATCCGACGTGTCCTCCTTTGAGATTCAGCACAGTGGACTTGTGAAACAGCTACTGCTGTATCTGACATCAAACAGCGAACGGGACACGATCAGTAGAGACGAGAGAATCAAGAGGTTCCTGCATGTGTTCTTCGGCTGCCCGATACCAGGGCAGGAACCTCTGGGACGTTTGGACCCAACAGAGAATGGCCCACTGCTGGCATTGGTGCACAAGATGAACAACTGCCTTAGTCAGATGGAACAGTTTCCTGTTAAAGTGCATGATTTTCCCAGTGGGAATGGCAACGGAAGCAGAGGTTCACAAGCTCTTAAGTTCTTCAACACACATCAGCTGAAGTGCCAGTTGCAAAGACACCCAGACTGCACCAATGTAAAGCAGTGGAAGGGCGGTCCGGTCAAAATCGACCCCTTGGCTTTGGTTCAAGCTATTGAGAGATACCTTGTGGTTAGAGGGTATGGAAGGATTagggaggaggatgaagacaGTGACGATGATGGTTCTGATGACGAGATTGATGAATCTTTGGCTGCCCAGTTCTTGAATTCTGGGAGCGTACGTCACAGGCTGCAGTTCTACATAGGGGAGCACCTGCTGCCGTACAACATGACTGTTTATCAGGCCGTGAGGCAGTTCAGTTTACAGGCCGAGGAGGAGCGAGAGAGCACAGATGATGAAGCAAATCCTCTGGGACGGGCTGGCATCTGGACCAAAACACACACGATATGGTATAAGCCAGTCAGAGAGGACGAAGAGGGCTGTAAAGACGCTGTCGGAGGGAAGAGGGGTCGCGCACAGACGGCTCCCACTAAAACCTCCCCACGAAATGCCAAGAAACAGGACGAACTATGGCATGagGGTGTGTGTCCCAGTGTGACAAACCCATTAGAGTCATACCTCATTAGTGATCCTCCAGAGGGCATTACTTTTGATGATCCTTCAATGGAGGTGATTCTGCTGCTGAGGGTCCTGCACTCCATCAGTAGATACTGGTTCTACCTGTACGATAATGCTGCATGTAAAGAGATCATTCCCACTGGTGAGTTTATTAACAGTAAACTGACAGCAAAGGCCAACAGACAGTTGCAGGATCCACTGGTCATCATGACAGGGAACATCCCCACCTGGCTCACTGAGCTCGGCAAGACCTGTCCATTCTTCTTCCCGTTTGACACGCGGCAGATGCTCTTCTACGTGACTGCATTTGACCGCGATCGCGCCATGCAGCGCCTGCTCGACACCAACCCAGAGATTAACCAATCTGACTCGCAAGACAGCCGTGTTGCTCCACGCCTTGACAGGAAGAAGAGAACGATAAACCGTGATGAGCTCCTGAAGCAAGCGGAGTCGGTAATGCAAGACCTCGGGAGTTCCAGAGCCATGCTGGAAATTCAATACGAGAACGAGGTGGGAACAGGCCTTGGACCTACGCAAGAGTTCTATGCTCTGGTGTCTCAGGAGTTGCAGAGGGCCGACTTGGGTCTTTGGAGAGGAGAGGAAGTCACTCTCTCCAACCCTAAAGCAGGGAGTCAGGAGGGTACCAAGTATATGTTCAGTTCCAGAGGGTTGTTTGCTGTACCGTTTGGGCGAACTACCAAACCAGCTCACATCGCCAAGATCAAAATGAAGTTCCGTTTTCTTGGAAAACTGATGGCTAAAGCGATCATGGACTTCAGATTGTTGGACCTGCCTCTAGGTTTGCCGTTCTATAAGTGGATGCTGAGGCACGAGTCCTCTGTCAGCTCTCATGACCTGGTCAACATTGATCCTGGCGTTGCCAAATCCATCCAGCACCTGGAGGACATCATCCGCCAGAAGAAGAGAATAGAGCAGGACAGATCACATACACGGGAGACCCTACAGCAGGCCTTGGAGAGTCTCAACATGAACGGCTGCTCGGTGGAAGATCTGGGCTTGGACTTCACTCTGCCTGGATTCCCAAACATCGAGTTGAAGAAAGGGGGCAAAGACGTGCCAGTCACCATTCACAACCTGGAGGAATACCTCAGAttGGTGGTCTACTGGACACTCAATGAGGGTGTCTCTCGGCAGTTTGAGTCATTTAGGGAAGGATTTGAGTCTGTCTTCCCTCTGCATCACCTGCAGTACTTCTATCCTGAAGAGCTGGATCAGTTGTTATGTGGAAGTAAGTCAGAGTCCTGGGATGTGAAGACACTAATGGAGTGCTGCAGACCAGACCACGGCTACACACATGACAGCCGTGCAGTGCGATTCCTGTTCGAGGTGCTGAGCAGTTTTGATGCAGAGCAGCAGAGACTTTTCCTGCAGTTTGTCACAGGCAGCCCCAGACTTCCTGTCGGAGGATTCCGGAGCTTAAACCCTCCCCTCACCATCGTTCGGAAGACGTTCGAGTCGACGGAGAACCCGGACGACTTCCTTCCATCGGTGATGACGTGTGTGAACTACCTGAAACTGCCGGATTACTCCAGCATCGAGATCATGCGCGAGAAACTGTTGATTGCTGCGCGCGAGGGCCAGCAGTCTTTCCATCTGTCTTGATCTCACCTCCTGCACCCTCTCACTCAAAATGGCCTTCAATCAACTCACTGCAGAACCACACAAATCGTGACTTCTTCCTTTAGagttcctcttcctctttcatttttttcctgccctttttctttcctttttttttttttttttttttttttttttttttaacaaacaccCACATTGAGGCAAAATATGTACAGCCTACTTGTTTAAAGAAAAGCAGCTTGCAGAAACTAAACGATAGAACATATGAGACTTCCTTTTGACTCCTGACCGGGAGGAAAGGGTGTTATGCGACtcatcagattaaaaaaaaaaaaaaaaaaaaaaagagaagaaaacatttttttaaagaaacatttaaaaaagaaacttcaGAGCagattataaaatatatcagtagTTGAGAGATGTTCAAGCcgaaaaaaaagaggagaaaaacctgggtgacattttaaaacttgcGTTGCTGTCTGAtgtatcaagaaaaaaaaagggatgttttttttttttcctcctggtGAATGACATCTTCACTGTGTGTTCCTGTTGGGGAGGGGGCATCCATCAAGCCGGCGAGGGTTCCTATAGCTCCAAAGATCATTTGTACAGACAAACATTTGCAGATTTTGCTTATTCGACACATTTGATAGAATAGCTGTGTGCTCTCCTGCCCAGTTTCCCTTCTGTTCTGTATTAAACTCCGAACGTCTTGTTACATTTTGGTTCCACTTTGTTgtttaatttctctctctctcctcttgtgtgtcacattttttttccctcctttttaTTTGAGAGAATTTTTGAACGCGTCAGAGAGTTCCAGTTGGTTGAATGCGGGTAGTGTTGGAAGTGTAGtatctttattatattattataattattattattataattaatattattatttttttttttttgttttgtttttttaacccaaGTTGAAATTGTTTTCTGGCCGACATTTCACACAAAGTGTCAGCTCCATGTTGAAAAGATGTATCCATTGTGTTGGATGAATAGACTCCTATATGGTTATAGTAGTGTGCCTCTGCTGGACTTCTGGGGACTTGAGGTCTTAATGATGGGCCTGCTGAAGTTGCTCGGCTGGTGAGCTGGGCTTTAATCCCGTAATGTAGCTGAGCACaagaaattcatttaaaagaattgGCTGGTCTTATTTTATGGTTTCATGGCCAGattgcatttcagaaaaaaaaaaaaaaagttcatttaaataaaacaaagtttatATGCAGTTTTCACACCCGGTTTGAGGTGGGAttgtctgcttttttttttttttttttttaattttctattgtttctttatttttttctcctcttgctgtagtttatttttgcactgcTGGCTTGGAACAAACCGTGGTGTGCACTGCAGTCAGTGGCCAGGAGGAGGTGCTGCTCTGCGCTCTCCTGTCCTCATTGTTCATGTGCTGGTTTCTAAGATCTGCAATAATTTACTGCATCAGGTTCATGTTTTTACCTGAAcataaataaagtaattgtttGACTCAG

Function

GO:

id name namespace
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185293 lncRNA upstream 54288 10936365 ~ 11044066 (+) True G125480
TU185295 lncRNA upstream 178021 10898164 ~ 10920333 (+) False G125481
TU185294 lncRNA upstream 192792 10898164 ~ 10905562 (+) True G125481
XR_006253185.1 lncRNA upstream 248665 10845452 ~ 10849689 (+) True LOC122363043
TU185276 lncRNA upstream 311331 10785905 ~ 10787023 (+) True G125470
TU185365 lncRNA downstream 99708 11234349 ~ 11237141 (+) True selenot1b
TU185379 lncRNA downstream 164362 11299003 ~ 11299260 (+) True G125540
XR_006253135.1 lncRNA downstream 172906 11307547 ~ 11309510 (+) False LOC122362586
XR_006253134.1 lncRNA downstream 173017 11307658 ~ 11309510 (+) True LOC122362586
TU185388 lncRNA downstream 208954 11343595 ~ 11344675 (+) False trpc6b
XM_043264022.1 mRNA upstream 69625 11007590 ~ 11028729 (+) True LOC122362532
XM_043264842.1 mRNA upstream 201292 10889486 ~ 10897062 (+) True LOC122362997
XM_043264843.1 mRNA upstream 202480 10889486 ~ 10895874 (+) False LOC122362997
XM_043264838.1 mRNA upstream 208953 10884597 ~ 10889401 (+) True LOC122362995
XM_043264841.1 mRNA upstream 220518 10872756 ~ 10877836 (+) False LOC122362996
XM_043264845.1 mRNA downstream 2410 11137051 ~ 11206596 (+) True veph1
XM_043264847.1 mRNA downstream 2410 11137051 ~ 11206596 (+) False veph1
XM_043264846.1 mRNA downstream 4380 11139021 ~ 11206596 (+) False veph1
XM_043263958.1 mRNA downstream 83897 11218538 ~ 11224508 (+) True ankrd67
XM_043263959.1 mRNA downstream 85612 11220253 ~ 11224508 (+) False ankrd67
TU185314 other upstream 128587 10968085 ~ 10969767 (+) True G125496
TU185257 other upstream 261078 10824974 ~ 10837276 (+) False G125461
TU185261 other upstream 261078 10824974 ~ 10837276 (+) True G125461
TU184804 other upstream 1732866 9359436 ~ 9365488 (+) True G125192
TU184604 other upstream 2561406 8176353 ~ 8536948 (+) True G125041
XR_006253172.1 other downstream 91474 11226115 ~ 11231714 (+) False ccnl1a
XR_006246968.1 other downstream 99690 11234331 ~ 11237147 (+) False selenot1b
TU185364 other downstream 99708 11234349 ~ 11237141 (+) False selenot1b
TU185801 other downstream 1674809 12809450 ~ 12822781 (+) True G125830
TU185810 other downstream 1745947 12880588 ~ 12884612 (+) True G125836

Expression Profile