RNA id: XM_043264463.1


Basic Information

Item Value
RNA id XM_043264463.1
length 2268
RNA type mRNA
GC content 0.41
exon number 15
gene id def8
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 6961115 ~ 7019049 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGctatctctctcttcctctctctctcgctctctgaaaaataatcagaaaagcAAATGCCAGCTACTATAGCGCGTACATCCATGCGACGTATGGCTATCATCTATTACTTTTCAGCCTGTCTTCTGGGATGATGGCGTTTATGCAATAACGCTGCTGAAACTGCATAAAGCGTACTAATAGTTGAACATCACTGGAACAAAATCTACAAATACAAACCAAGCAGGAGTGTTGGCTAATAGTAACACTGACCTGCAGTCACACTGCACTTTCTGTGCTGGAGCCAAACAATGGAACTTTTTCGATAGAAGAAAACAGGGAAAAGATGTGACCAGTGTCATGGAATATAATGAAAGACTTGCCCGTTTTCGTCAGGGTCATGTCAACCCATTTGACAGGAGAGAGATTGACAGCAACACTGAGGAGAAGGATTCTCCAAAACATGAGGTGAGGTCAGAGATCTTTTCCTCAGAATCCAGTTCAGACCGAGCAGTGGATCTGGGCTTGGCTGAAGACCATTTCTCTCGACCTGTGGGTTCGTTTGTGGCATCTGATGTAGAGCAGCTAAAACAGGCCATAGCAGATTGCAAGAGACTGATCCTGGAACTTCCAGAGCATTCAGAGAAACAGAAGGACACAGTCGTCAAACTGATCCACCTTCGGCTCAAACTACAGGAATTAAAGCAGGACCCAGAGGAAGATGAACCGAACCTGCAGGTTCTGTTAGAGCATCGATTCTCAAAGGAGAAGAGCAAGAGTGTCAAACAGATGTGTGACAAGTGTAGCACGATCATATGGGGCCTCATTCAGACCTGGTATACATGCACAGGTTGTTATTACCGTTGTCATAGCAAGTGCATGAATCTTATCAACAAACCATGtgtgaggtcaaaggtcagccaTCAGTCTGAGTATGAACTCAGCATCTGTCCTGAAGTTGGTCTAGACAAACAAGATTACAGATGTGCTGAGTGTCGAACACCCATCTCTCTTCGGGGTGTTCCAAATGAGGCACGGCAGTGTGATTATACAGGTCAGTATTACTGCAGCAGCTGCCACTGGAATGACACAGCCATTATTCCGTCTAGAGTCATACACAACTGGGAGTTTGAGCCCCATAAGgtgtgtcgtACATCAATGCGCTATCTTGCTTTGATGATGTCCAGGCCTGTGCTCAAACTTAAGGAAATCAACCCACTTCTTTTTAACTTTGTGGAGGAGCTGGTGGAAATCAGAAAATTACGTCAGGATATATTGCTAATGAAGCCATATTTCATCACTTGTAAGGAGGCCATGGAAGCCAGACTCCTGCTGCAACTTCAAGATCGCCAGCACTTTGTGGAGAATGATGACATGTACAGCCTACAGGATCTGATTGACACCTCCAGTGGGCGTCTCAGCTGTTCCCTTACTGAAATTCACACAACATTTGCCAAACATATTAAACTGGACTGTGAGAAATGCCAGGCGAAAGGCTTCATGTGTGAATTGTGTAAAGAGGGTGACATTCTCTTCCCATTCGACAACCACACCTCTGTCTGTAATGACTGTTTTGCTGTTTTCCACAGGGATTGTTACTATGATAACTCGACCACATGTCCGCGCTGTGCAAGAATGCTGGAACGGCAACAGGAGGAGTCTCAGAACCCATAGATGAGCCTGACAGATGAATGCATCacaaatactgtgaaatatctTCAGAGTCAGAACTTGTATTATATTAAGttgtattatgttatttatttgttcttgatGTTTTAACTATACAACTGTCAGCTTTTGAGCGAACATTAAGTGGGATTAGCACATTATGAAGACTATATTCCCATAAACATAGAACGTTGTGTTAGTTACACGTCTTCAGTGAGAAATCATCTGTCAAATTTAACAATGCCATGTTTCTCTTAAGAATGTGACTGTTAGACCAATTTGATTATTTTCCTGGCTAGAATGCTTTTTAAGAGACCaggaaaaaatactacaaaGCTGCACTATGTTCTGCCTTATAGTTATATCCCCATAATACACTGTGGTTTAATGTAACATACAgataattaatttcaattaatgttttaacaaaTGCTGTGCAACTATATCTGGTTAAAGATTTATCTCAGAATGAATTcctctgtatttctgtattttttttctgtaacataATACCTGGTGTAAAATTGTAGGTTATGTGCAAGACAGCATATGAAGTGTTATGAAGTCCAATGTGAAGATATCTTCAAACAaagcatgaataaaaaaaatggaacatGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184388 lncRNA upstream 20013 6940759 ~ 6941102 (+) True G124877
TU184378 lncRNA upstream 32575 6928327 ~ 6928540 (+) True G124867
TU184377 lncRNA upstream 33165 6927624 ~ 6927950 (+) True G124866
TU184287 lncRNA upstream 124193 6836700 ~ 6836922 (+) True G124799
TU184283 lncRNA upstream 146480 6814324 ~ 6814635 (+) True G124795
TU184418 lncRNA downstream 15394 7034443 ~ 7034667 (+) True G124902
TU184420 lncRNA downstream 36343 7055392 ~ 7055773 (+) True G124904
TU184423 lncRNA downstream 40302 7059351 ~ 7059597 (+) True G124907
TU184429 lncRNA downstream 152970 7172019 ~ 7172434 (+) True G124913
TU184474 lncRNA downstream 298173 7317222 ~ 7319011 (+) True LOC122323033
XM_043264206.1 mRNA upstream 22957 6935956 ~ 6938158 (+) True mc1r
XM_043264790.1 mRNA upstream 51040 6872800 ~ 6910075 (+) True tcf25
XM_043216931.1 mRNA upstream 89633 6868863 ~ 6871482 (+) True LOC122323232
XM_043263916.1 mRNA upstream 116788 6841363 ~ 6844327 (+) True pdcd5
XM_043264116.1 mRNA upstream 126552 6831968 ~ 6834563 (+) True uraha
XM_043264293.1 mRNA downstream 69769 7088818 ~ 7090566 (+) True LOC122362721
XM_043264297.1 mRNA downstream 826951 7846000 ~ 7848851 (+) True LOC122362727
XM_043264936.1 mRNA downstream 971484 7990533 ~ 7994775 (+) True emc8
XM_043264620.1 mRNA downstream 976523 7995572 ~ 8005861 (+) False gins2
XM_043264659.1 mRNA downstream 1124450 8143499 ~ 8168224 (+) False si:ch211-220f16.2
TU184202 other upstream 420208 6539247 ~ 6540907 (+) True G124727
TU184178 other upstream 669190 6291491 ~ 6291925 (+) True G124707
TU184110 other upstream 981833 5976210 ~ 5979282 (+) True G124661
TU184051 other upstream 1331462 5623453 ~ 5629653 (+) True G124612
TU184037 other upstream 1565803 5394895 ~ 5395312 (+) True G124598
TU184395 other downstream 7269 7026318 ~ 7027135 (+) True G124881
TU184430 other downstream 153577 7172626 ~ 7173020 (+) True G124914
TU184436 other downstream 158790 7177839 ~ 7178276 (+) True G124920
TU184604 other downstream 1157304 8176353 ~ 8536948 (+) True G125041
TU184804 other downstream 2340387 9359436 ~ 9365488 (+) True G125192

Expression Profile