RNA id: XM_043264535.1


Basic Information

Item Value
RNA id XM_043264535.1
length 5927
RNA type mRNA
GC content 0.51
exon number 23
gene id cttnbp2
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 4136996 ~ 4177118 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCGCGTTCGTGTCACTCCCTCAAAGGCTGTAGGTTCACACCTCTTTTCAGGTTTACATCTGGACTGAGCCGCGCAACCTGCTCCCCGTCAAAATCTAACCCAGAGCCCTGCTTTAACGTGTTTACAGCTGGAAGATGAATTATCGGCTCTCTGCGATTCTTTTGCAGCACTGTAATAGTTAAATCGTTGCCGAATGCGTTATTTGATGCGGTGTGTGGTGCCTAAGCTTGAACAGTCCTCTACAGTGAGAAGATGGCGTCGGACGGAGCGAAAGGGGAGCAGCCACCTCCGCTACAAACACTGGTAACCACTGGCCATGGAAGCGTCGAGGCGaaatGCGAGCTGAACATCGACAACCTGAGCAAACCAGAGCTCCTGACCCTTCTGAGCATCATGGAGGGAGAACTTGAGGCCAGAGATCTGGTCATTGAAGCTCTTAGAGCTCGTAGGAAAGAAGTGTTCCTGCAGGAGCGATATGGACAATTCAGCCTGACAGACCCATTCCTCGCCCTGCAGAGGGACTTTGAGTCAGGGACGGGGTCAAAGGACCGAAGGCCTGTTAGCGCGAGTCCCATTACTGTGCTGGAAGCTGTTATGGCCCATTGCCGTAAGATGCAGGAGAGGATGTCTGCCCAGCTCTCGGCCGCTGAGACCAGGCAGAAGAGGCTTGAAATGGAGAAACTGCAGCTGCAGAGCCTGGAGCAAGAACACAGGAAGCTGTCGGCTCAGCTGAAGGATGAgcgagagaaaaacaaacacgtgGTGATGTCACTGGTGCATGAATGCAAGCAGCTAGCTGCTCGTGTGGTCGAAGAGAACCAGCGCTTCGATGAGCTCTCGTCCCGCACTGAGCAAGAAGGCCGCTCCATGGGACGACTAGAGGAAGAACTGGCATCCGAACGGCGTCGTAGCCAACAGATGGAGGCCGAAATGGAGAAACAGCTGGCCGAGTTTGACACAGAGCGAGAGCAGCTACGGTCTAGGCTTAGCCGCGAGGAGATGCGTGCTGCGGAGATGCGAGCTGAAAGTGAGAATCTCCGCCAGCAGGTGGAGCAGCTAAGAACTGAGCGATGCAAAGATGCCCCTCCACTGCCTTCTGCCCCAGCATCTGCCCCAGTTAAACCCAAGACTGTGGCATCTGTGGCTGTGGGCACTGAGGCCACTGTCTGCAAGGCTGCCTCTTCTCAGACAGATGTACCACAGGAAAACGAAGGGACTAAGAAGGTGCCACTTTCCATCCCCGTCAAGCCTACAGGTTCCACCTATGCTAGCATGAACCTACCTAAGACTTCCAGTGTAGGCCGGGGGCTACACCATGGGAGCTCTCAGTCAGAAAATGGAGGAGAGGGCCAAACGCATGCGCATGGCTCACATTCACCTGGTGTGTCTGCTACCTTGCCGACTGGGGTCAGTCCACGCGTCCAGGCAGCCCGTTACAAATTCCAACCCTCTGCTTCAGAGCAGGACCAAAATGGAACCGCAAACCAGAGCCCCCCTTCCCGCGATCTGTCCCCCACAAATCGAGACAACTTTGCAGCCAAACAGCAGGCACGCCACACAGTCACACAGGTTCTCTCCCGCTTTACAAGCCCTCCAGCAGGGGGGGCCCCTGCAGCACTTCGTCCTGGTCTGCCACACTCCGCATCTGAGGGGGGACCATTCACCGGGCGTTTGGGCCACCCCCAGATAGGCCTTAAATCACCAACTGTGGCCCGCATTGACCGGGGTAACCCACCTCCCATCCCACCAAAAAAACCAGGACTCTCCCAGACACCGTCCCCTCCACACCCACCAATCAAAGTAGTCTGTGAAGCCAGCAGGTCCCCGGGAACAGGACTGGGGGTGGGCCTTGCCAAATCAACTGCCACCCCTCAACTTCCACCAAAGCCCTCCTTAGATTTGGGCGGTACAGTCCCAGCCTTGACTGCGTCACAGGTGGGTGCCTCCTGTACTGGCTGGCCGTGGGGGTCACAGCCGACAGCAGCATGTGTGGAGTGTCCCCCTGTCACCACCTCCTCCACAGCTACCATTGTCAGTAGCCCCTCCATAAACCCACCTAGTCTTCAATCCCATAGCCCCCAGCACCCGGGCAGCCCCCTGGCAGCAGCATCAGGCTGGTGTCCCTCCATAGTCCCCTCGCTAACCTGCGGTGACCCCGTCCCCCTGGATGACGGGCAAACCCTTCTCCTCCAAGCTGCTTCCCAGGGAAATGTCACTTTATTGTCTATGCTGCTTAACCAAGATCCACTATTGGATATTCATCACCATCAACATGAATTAACCTCTGCATTGATCTCTGCTGCTCTTAATGGACACACAGacTGCTTAAATTTGCTGCTGACTTCAGGGGCATCTGCTGATGCTGTTGATGAAACAGGATTTACGCCGTTACATGCCGCTGCTGAAAATGGTCACCATGGGTGCGTGAGAGCTCTGGTGAAATGTGGAGTTGACTTGGAGAGGGAGTGTTCGCAGGGAAGGACCCCTCTGTACCTGGCCTGTGAACAGGGACATGTGGAGTGTGTGAAAGTCTTGCTAGACGCAGGAGCGGACTGTTCACATGTCACGTCTGACAACTGCACGGCTCTGCATGCCGCGGTCAGTTCAGGTCACGTGGGCCCTCTGAAGCTCCTGCTACACCACCCATCTCCTGAACCAGACCTGAGTCTCCCTGCATCTCCTTCAGACCCCAACCAGGAGCTCCAACACCCTGGCATAACCAAGGCTAGTCAAATTCTCAACCACAGTAACCAGGATGGCTGGACTGCCGCCCATATTGCTGCATCCAGGGGCTACAAGAAATGCCTGGAGGTTTTGTGTAACCACAGTCAACAAGACATGGAGAAGAGGGATAAATGTAATCGCACCATACATGATGTTGCCACAGATGACTGCAAAGACCTATTAGAGAACCTGGACTGGTACATAGTGGTTGTACAGGTGCTCATGAGCTCCCCGGAGCGTCTTTGCCCTGTGGATCTCCTGGAGGACGGCTGCGCTGTTGGCAAAATTACTGTCCAACGCCATACTAGCTGGGAAGAAATGACAGGAAGCTTGAGTCACCTGCTGACCAGTCACCTTCAGCTAATTTGTGGGAGCTGGGAACTGGATGAAGCTCTGGGTGGAGTAGACTCTTTGGGGCTCTCTTCTAACAGCATGGCCTCTGTAGTTATAGGAGATGCTGTATGGTTGCCAGGACAGGAGCTGCCTCAATCTCCTTGGGACCTTGTTCGGAAACGCCTGAGTCAACGTATTACCATACATCTTAAAGGCCTGTCACAGTGCACTCTGGATGAGATGACGTACGACTCCCTGATCCCTCTACAGCTGCTGCAGAACTATGTCCGCCTGGTGGAACAGTACCATAATGTCATCTTCCACGGGCTGGAGGGCAGCTTTCAGGATTACATCGCCAATCAGATCTCTCATTATATCAAGCACAGGCAGGAGGCCCAGGGGATCGGCTGTGATGTCGTCAGGGTGGAGATAGATGAGGGTCTATCAAAAGAGCACCTGCTGGAGATCTTCATCAACTGTGGGTTCCTGTTGTCTTTGCATGAAGGCAGTGCTGGGCGCTGTGTTGTGGTGGTCCTGGAGGGTCTTCAGAGAGCCCACTCTCTCAGCCACCTCCTGGGAGACCTGTGCGAAGCCCTGGAGAACCGAGGATCTGTCTATTCCCTCTCTCTCAACCATGGTCACGATGGGCTTTACTATTTCCATGAAGGGAGTTTTTTGATTGGCACAGTGGCCAAGCCTTGTCTGCATGGTGCTGAGCTACGATTACAGCAGCACTTCCGCTGGGTTCAGCTGCGCTGGGACACCGAGCCCCTCAATGGCATGCTGGGACGTCATCTACGCAGAAAACTCCTCCACAAGACTCAGGGCCGGTGCTGGACTTCTGATGATCCTGTACACAAATGTCTTTCTTGGGTGTGCTCAGTGTGGCACCAGCTCAACTCCTGCCTGTCTCGTCTGGGGACCTCAGAGGCCTTGTTGGGACCCTATATCTTCCTCTCCTGCCCTGTGAATCCAGAACAGACCCAAGCTGTTCCCAAATGGTTGGTGAGGCTTTGGAACGCAGTGATAGTTCCACGGGTCGAGGATGCTGTTATATCTAGAGTAACAGCCAAGCGCTCTCCCTCCCAACGACGCTCTCCCAACAACAAAGGTCTGAGCCCAGGTCAGAGGGCGGTAGTCAAGGCAGCTCTCAATATCCTGCTGAATAAGGCTGTGCTGCAGGGCTGCCCACTGCCCAGAACAGAGATTGACAGGATTTTACCGGAGTTCCAGGGAGGATGTTTTCCTCTTTCCACCATTGGCTCTGCCTACAGGAAAGGTGGCAGAAAAGGCCGTGATAATGGCGTTTGGAGACGAGCCAATACCAGTCCAAGGAAGAAAGGGAGCCCCGCCTCTGGGAGGAGCTCTGGCTGCTCTTTAAGAGAAGGATCTCTGGCGAATTCAAGCGCTCACTCAATGACAAATGTCAATCATGCAAGACTCGGTGATGGAGTTGCTGTTGGTCTTTCTCTGTGCTCTGATGATGAGACGGATCTCATCAGAGAGCTCCAGACCATGTGCTCAAGCAAATCTGAGCCAGACATAAGCAAGATTGCTCTTTTTAAAGAGGACTTCATCATGCTTCCAGACTCGATTCCGCCCACTCCTCAGAGGAGTGATGCCGAGGTCACGCAGCCCCAAACACACCCTGTTACAACAGAGAGTGCCGTGGATATGACCCATCCTCCACCACAGAAGatggACAGTGGTCACGCTTCTCCTCGACGAGCGACAAGGCCCAGATCGCATCTGCCCGTCCCCAGCAGCAGAGGGGTTCAGCAGGTGAACACCTCCAGCAGTGCCCTTCAGAGTCACAGCAGCAATCCTAGCAGAGCCTCCACGAGCAGTAGAGCAAGGCAGCCCCCATCTCATAACAACAGAAACAACTTCTCACAAGACGACATCTGGTTCCTGGACCCCAACTGTAATGAAAACTACAGTAACCGTTGATAGACACCTCCCACTGCCCTCCTTTTGCCCTCAGTCTGTTATGTTGTGAAGTTTGGTTACTGGCAGCATTTTAGTATTTGTACATGTTGTCCATACTTGTTACACTATATTACATTGTGTACTTTGGGAccatagttttaatatattcaacTGTTTAAGTAAAGaactctgaggaaaaaaaaaaaaaaggacgaTGAACTAACAAAAGAAAGACTGCTCGAACACTTTACAATTTACCTTTTAGGTCAAATGTTTTGGATCAAAGAGCTGGTAGTCTTTTTGCTCTTTAGTATTTTCAATCAATcgtgttttatgtttaaataagtGAAAGGTGAGTTTTAAAAACTGTCGAAAATCAGGGTTTTACCAAATATGTGTAAATAAGAACTGGGAACTTAAATGTTGTATAGATtagcgtgtgcgtgcgtgcgtgcgtgtgtgtgtgtgcgtgtgcgtgtgcgtgatATTGCGCTTGTACATTGGAGGAATTTTGAAGGGAAAATGAGAactgtatatattgtttgtaatattaaattttGGTTCATATTTTTTCACTTGTTTCCAAACGAACTGAATGTGGCAATAAGTACCGCCATCGCGAACACAGGATATTTTGTTTTCGTCCATTAAGCCATAATTAGTATTTTCAATTACTCTCATGCGTGCTCAGTGACCGGCTTGAACTTTGACTTTGTGAAACCCAACTTTGAAACGGAAGTGGCGCGCATTAACTTTTCGTTTTCTTCTATATTGAACATTTAGGATAaacaagtattattttaaagtcagtATTGTTCATATGTACAGAAGAGATTATAGTCGACCTCtgatgtttaaatgtattatagttGTCGGATGAGGTTCAGAGAAATTGTCCTGTTTCCTCCAAgcacaacaattaaaaatgcactATCCTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183476 lncRNA upstream 1404 4135383 ~ 4135600 (+) True G124161
TU183475 lncRNA upstream 2418 4134078 ~ 4134586 (+) True G124160
TU183473 lncRNA upstream 10231 4126369 ~ 4126773 (+) True G124158
TU183367 lncRNA upstream 23947 4109426 ~ 4113057 (+) True G124095
TU183369 lncRNA upstream 27864 4108730 ~ 4109140 (+) True G124097
TU183654 lncRNA downstream 1922 4179040 ~ 4179356 (+) True G124292
TU183655 lncRNA downstream 3308 4180426 ~ 4181289 (+) True G124293
TU183656 lncRNA downstream 4267 4181385 ~ 4182391 (+) True G124294
TU183657 lncRNA downstream 5615 4182733 ~ 4183651 (+) True G124295
TU183831 lncRNA downstream 284727 4461845 ~ 4462124 (+) True G124427
XM_043263942.1 mRNA upstream 13300 4114968 ~ 4123704 (+) True synm
XM_043264982.1 mRNA upstream 28806 4028238 ~ 4108198 (+) True igf1ra
XM_043216712.1 mRNA upstream 122463 4007475 ~ 4014541 (+) True anpepa
XM_043216751.1 mRNA upstream 131435 4002956 ~ 4005569 (+) True si:dkey-12e7.1
XM_043264149.1 mRNA upstream 165903 3966372 ~ 3971101 (+) True syt19
XM_043264070.1 mRNA downstream 23263 4200381 ~ 4213997 (+) False asz1
XM_043264071.1 mRNA downstream 23263 4200381 ~ 4213997 (+) True asz1
XM_043264072.1 mRNA downstream 38303 4215421 ~ 4223120 (+) True wnt2
XM_043265053.1 mRNA downstream 47662 4224780 ~ 4237212 (+) True bcl2l13
XM_043265052.1 mRNA downstream 47662 4224780 ~ 4237212 (+) False bcl2l13
XR_006253139.1 other upstream 393248 3719888 ~ 3743756 (+) False nrn1la
TU183320 other upstream 582314 3511966 ~ 3554690 (+) True tmem170a
TU183022 other upstream 1831426 2302526 ~ 2305578 (+) False plin1
TU182722 other upstream 2134714 2001786 ~ 2002290 (+) True G123664
TU182587 other upstream 2565073 1565426 ~ 1571931 (+) True G123568
XR_006246974.1 other downstream 563750 4740868 ~ 4740965 (+) True LOC122323235
XR_006246980.1 other downstream 564137 4741255 ~ 4741324 (+) True LOC122323241
XR_006246981.1 other downstream 564436 4741554 ~ 4741651 (+) True LOC122323242
XR_006246975.1 other downstream 565189 4742307 ~ 4742435 (+) True LOC122323236
TU183924 other downstream 582519 4759637 ~ 4793251 (+) False LOC122322928

Expression Profile