RNA id: XM_043264546.1


Basic Information

Item Value
RNA id XM_043264546.1
length 4488
RNA type mRNA
GC content 0.49
exon number 16
gene id large2
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 13051968 ~ 13165194 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCTTGCTCTGTACCTTTCAGCTGCAGATCAGAGCACAACGGCGAGAGATTAACACTGTTCATAAGCACCGAGACGTGAGGAAGATGGAAGAGGACCTCGAGTGTGTCCACGCGAGGGACAGAAAGCTGATTTAGGGTTGCTCTGCACTGGTTTCTTCTTCTAGGAGTGCCTCAGGGTAAGGACTCACTGTCCCTTGTCTGTCTCTTTTAGGAGTCTCTGTGATCCTTTGAGGCATGGACTACATATCATTTCAACCTTCCTGGGACTCTTCCTCTAAGATCTTGGAGCGTTTTCTTTCACCCCGTTTCTAAAAGAGTGAGAGATATCTGTGTCGTGCACTGATTCCATCAGACCTGAAGGGTTTCGTTCCAGAGTTCCTTCAGtcttctctgcctctctctctttctctctctctgtgtctttgtgATCATGCACTAAAATCATCAGTTCGTACATCGAGGGCACACCTGTCTCTCAAATTGGATCTAACCAGAACTCTGCAGCTGGAATTTTGGGATGGATATTGCGATGGATTTTGGGATTGCCGTATGCTTCATTTAACGCTGAACCTGCCGCACGAGACAAGGTGAAAAAGGGTTTCAGAGGGGTTGAAAGTAAAGGTTTTCCAGTGATTAATCAGTCTGGGTCAGCAAACACGTCTCTTCTGCATCACAGAGCTTCCAGGACGCATTCTGACGAGAGGATGCTGCAGGAGACCAGCTCTAGAGCAAGTCCAACCTGATCGCTCCATCCCCCTCCCTCCCCGGCCCAGTCCTCCACAATCCCAGGATGCTCTGCCCCTGCCGAGGGAAGCTGAAGCTGCTGGTGGTGTCTCTGAGTTTCGTCATCCTGTTCACCTGGCTTTACCTGCTCGTTGGGAACTCAGAAAACGGGCGTTCCCTGCTCCTCTCCGCATGCTTGGTGGAATCCACAGAAGCACGGCTGCTGGAACGGGACGTCCTGGCATCGCGGGTTCGAGAGGTGGAGGAAGAGAACCGGCAGATCCGACTCCAGCTGAGCCAATCGCAGGGCCTGGCTGCCCAGCCTGCCGAGGGTAACTATGGCAACCAGCAGTGGGTGGCATCCGCAGACACCGGTCCAGAAGACGTGGAGAACACAGCCGAGGAACGGGCCAATCACAGCGAGTGTTCTCGCTCTCCCACCGCCGAGAAGTGTGAGTTGATTCACGTGGCATGTGTATGTGCGGGTCACAACGCCAGTCGGGACGTGGTCACTCTGGTCAAATCTATCCTGTTTCACAGGAGAAATCCACTTCACTTTCATTTCATCACAGATACGGTGGCCAACCAGATCCTCAGCTCTCTGTTCCAGTCGTGGATGGTTCCATCTGTGCAAGTCAGCTTCTATGACGCTGACGAACTCAAATCAGAGGTGTCATGGATACCAAACAAACACTATTCAGGAATTTATGGCCTGATGAAGCTCACTCTCACCAAAGCTCTGCCGTCCAACCTTTCAAAGGTCATCGTCCTCGATACAGACATCACCTTCGCCACTGACATCGCCGAGCTGTGGGCCATCTTCCGGAAGTTCACAGAGAAACAGGTGATTGGTCTGGTGGAGAATCAGAGCGATTGGTACCTCGGGAATCTGTGGAAAAATCACAAACCCTGGCCAGCCCTCGGACGAGGCTTTAACACAGGTGTGATTTTGCTCTACCTTGAGAGACTGCGTCGCATCGGCTGGGAGCAGATGTGGAGACTGACGGCCGAGAGAGAGCTAATGAGCATGCTTTCGACATCCCTGGCAGACCAGGACATATTCAACGCATTCATAAAGCAGAACCCAGTTCTGGTGCATCAGCTGCCGTGTTTCTGGAACGTACAGTTATCGGATCACACTCGCTCTGAGCAGTGTTACACCGAGGTGTCGGATCTAAAGGTCATTCACTGGAACTCTCCTAAAAAGCTGAGGGTGAAAAACAAGCACGTGGAGTTTTTCCGTAATCTGTACTTGACGTTCCTGGAGTATGACGGGAATCTCCTGCGACGGGAGCTCTTCGGGTGTCCCAGTCAGGCCAGCTCTGAGAGCACGGCGCTTCAGCAAGCACTGGAGGAGTTAGATGAGGACGACCAGTGCTATGATTTCCGGAGGGAGCGAATCATGGTGCACAGGGTGCATCTGTACTTCCTGCAGTATGAATACACACCTACAGATGACGGCACGGACATCACGCTGGTGGCCCAGCTCTCCATGGACAGACTGCAGATGCTGGAGGCCATCTGTAAACACTGGGAGGGCCCCATTAGTTTGGCCCTGTACATGTCTGATGCCGAGGCCCAGCAGTTCCTGCGTTACGCTCAGGCCTCTGAAGTCCTCAAGAACCGCAAGAACGTGGGCTATCATATCGTTTATAAGGAGGGTCAGTTTTACCCTGTCAATCTGGTACGCAATGTGGCGCTCCGCAACGTCAACACACCCTACGTTTTTCTGACTGATGTAGATTTTCTGCCCATGTACGGCCTCTACGATTACCTCAGaaaAAGTATAGTGCAACTGGACATGGCCAATACCAAGAAGGCTCTGGTTGTGCCTGCCTTTGAGACGCTGAGATATCGCCTCTCTTTTCCTAAATCTAAGGCTGAGCTGCTGTCTATGCTGGACATGGGGACTCTCTACACCTTCAGGTATCACGTCTGGACAAAGGGTCACGCGCCAACCAATTACGCCAAGTGGAGAACAGCCACGACGCCATACAAGGTGGAGTGGGAGGCGGATTTTGAGCCGTACGTTGTGGTGCGACGAGACTGTCCCGAGTACGACCAGAGATTTGTTGGCTTTGGCTGGAACAAAGTATCCCACATTATGGAGCTCGATGCTCAGGAGTACGATCTTATCGTGTTACCAAATGCCTTCATGATCCACATGCCCCACGCGCCCAGCTTCGACATCTCAAAGTTTCGCTCCAGTCCGAGCTACCGCTACTGCTTGACGACGCTGAAGGACGAGTTCCACCAAGACCTTTCTCGAAAGTACGGTTCTGCTGCTCTCAAGTACCTCACGGCACAGAGGAACATCTGAAAACTGCTTCAAATGTACTTTAGCGCACAGGAGAACGGCTCTGTCTAGTCATTTGAGGCTCGACAGCCAACACGCTGCTCTGCTACATGTGCGTCCAGAGGAACGAAGCTGAAGCCCACGTCTCTGCTGAAGACTATGAAATTAAAGCTTTAATTCTTCTTTTTGATAAGTCATACGGCAGAGAACCCTGAAAACCAATGACATCAGCAACACACCCATCAGACTGGTGGCGAAAACTCGACCAAACATGCTTGAACTGCTTATAAAAGACATTGGTAGACGTCTTGCGGTGACCCACCTGCTTTATAGCCTAAAACGAACGGTCACGATAAAGACCTTTTTTTGACAATCAGGGCTTTTTCTTCGCTAAAGATCTACGGCTAGCGGTCCACGGCGCTACGCAGCTTTGAATCTTCTGAAACCATTCGATGGAGCATCGATAGGACGAGAACTGAATGAGCTTTCCAAAGACTCTTCTGCTGGACTGAAGTGTGGGGAGGCCATCAAGACGAGGGACTTTTAAGCCTTATAATTTCAcggatatttaaaatatttaaaaatatttttctttgtttttaatgaagacAAAACAGTTTATGAACAACGACCTACAGCCTACGTACGTTTTACGGTGTGAAATCGAAAAATTgcgttattttttaatttagaaacacTGATTTGCTTGTAGCGAGGTCGAACGCTCGAGGTTTCGAGGAGGATTGATCAGTGCGTTTTAACTGCTGCATTTATAATTGTCACATAACAAATGGCGCATATTATGACGTGCTTAGTGTATACCGGGATGCTTCGAATCACTTTTCtcacttttcaaaaaaaaaaaaaaaaaaaattgcactacATACTGTTACAAAAAACACGACTATATGTACATCTGCATTGATATCCACCCAAGggaccattaaaaaaaaaaagaggcatcCGTTGCAGAAGATTCTTCCGGACTGAGTAATTGCTGACACTTCCTGTTATTGAAAACGATATTTATCTCGTGAAATGTCACATTCTGGTCAGCCCTGAAATAAGAACCCGATGTCCAATTCGGCATCAGTCACTCAAAGATGTGTTTGTAAAAaacgtaaaagaaaaaaaaatatgtgaaaggTTGTACGAACCGTTGTACCAGTCGCTGCTGTCACAATGTAATTCCCAGTGTGTCCCGTCTTTATAAAGAAACGCTCCTCCAGGTCATATTGAGTTGACCCCTCACACGCCACCCATGCCCTTCCGCTCCATCAGACTGCAGATTTACGGTAAATACCCGTGCCTTTGCTGTGTTGCGAAAACTGGATATTGATTGTACTACTGTACGCATCAGCGGGGCCTGCAAGAATACAGGTACtctatttattattgttgacTTAAATCAATCATATTTTTCTATGTAGGGGACaaagtgctttaaataaattctcCCTGTTTCTATA

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K09668 LARGE; glycosyltransferase-like protein LARGE

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185840 lncRNA upstream 92376 13009874 ~ 13012900 (+) True G125855
TU185741 lncRNA upstream 463840 12641192 ~ 12641436 (+) True G125784
TU185740 lncRNA upstream 468893 12636156 ~ 12636383 (+) True G125783
TU185704 lncRNA upstream 515332 12579725 ~ 12589944 (+) True G125760
TU185696 lncRNA upstream 693031 12411865 ~ 12412245 (+) True G125753
TU185872 lncRNA downstream 51320 13216514 ~ 13218281 (+) False LOC122362547
TU185885 lncRNA downstream 172560 13337754 ~ 13339066 (+) True G125877
TU185887 lncRNA downstream 181484 13346678 ~ 13346937 (+) True G125879
TU185889 lncRNA downstream 185297 13350491 ~ 13351730 (+) True G125881
TU185894 lncRNA downstream 202222 13367416 ~ 13369511 (+) True G125886
XM_043264725.1 mRNA upstream 104416 12990848 ~ 13000860 (+) True arfgap2
XM_043264726.1 mRNA upstream 104416 12990848 ~ 13000860 (+) False arfgap2
XM_043263971.1 mRNA upstream 126642 12968956 ~ 12978634 (+) True fam118b
XM_043263972.1 mRNA upstream 126642 12968957 ~ 12978634 (+) False fam118b
XM_043216625.1 mRNA upstream 138782 12956613 ~ 12966494 (+) True ilvbl
XM_043264059.1 mRNA downstream 51290 13216484 ~ 13222148 (+) True LOC122362547
XM_043264058.1 mRNA downstream 51290 13216484 ~ 13222145 (+) False LOC122362547
XM_043264060.1 mRNA downstream 53200 13218394 ~ 13222148 (+) False LOC122362547
XM_043264195.1 mRNA downstream 108003 13273197 ~ 13299638 (+) True cngb1a
XM_043264609.1 mRNA downstream 137342 13302536 ~ 13337442 (+) False kifc3
XR_006246961.1 other upstream 149331 12946841 ~ 12955945 (+) False glb1l2
XR_006246942.1 other upstream 179808 12917226 ~ 12925468 (+) False napab
TU185810 other upstream 220664 12880588 ~ 12884612 (+) True G125836
TU185801 other upstream 282495 12809450 ~ 12822781 (+) True G125830
TU185364 other upstream 1868135 11234349 ~ 11237141 (+) False selenot1b
XR_006253128.1 other downstream 51290 13216484 ~ 13218337 (+) False LOC122362547
XR_006253129.1 other downstream 51463 13216657 ~ 13218346 (+) False LOC122362547
TU185911 other downstream 261903 13427097 ~ 13430765 (+) False rpl35a
TU186277 other downstream 513851 13679045 ~ 13682571 (+) True G126132
TU186336 other downstream 744370 13909564 ~ 13912800 (+) True G126175

Expression Profile