RNA id: XM_043264629.1


Basic Information

Item Value
RNA id XM_043264629.1
length 2168
RNA type mRNA
GC content 0.48
exon number 11
gene id ccnl1a
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 11226113 ~ 11233814 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTTAcgaatctgtgtatttctagaTTGTAACGTCCTCGGCAGGTACCGACGACAGCTATCATGGAGGCGTCGATGGCCACCGGTCCCGCCGCAAACGCGCCCGCTAATAGCGAGGGCATATTAATAGGGGATAAAGTGTATTCAGAAGTCTTCCTCACCATCGATAATTCTTTGATTCCAGAGGAAAATCTCTCCCCGACTCCGTCTATGCAGGATGGCCTCGACCTGTACACCGAGACAGACCTGCGGATCCTGGGCTGCGAACTCATCCAGTCCGCCGGAATCCTGCTTCGACTGCCGCAGGTGGCCATGGCGACCGGACAAGTGCTTTTTCATCGATTCTTCTACTCGAAGTCTTTCGTGAAACACAGTTTTGAGATTGTTGCCATGGCCTGTGTTAACCTGGCTTCAAAGATTGAAGAAGCCCCTCGACGAATTAGGGACGTCATCAACGTGTTTCATCATTTAAGGCAGCTCCGAGGCAAAAGGAGTCCAAGTCCATTGATACTTGATCAGAACTACATAAACACCAAAAACCAGGTGATAAAAGCTGAACGGCGTGTGCTGAAGGAGCTGGGCTTCTGCGTCCACGTCAAACACCCACACAAGATTATCGTCATGTACCTGCAAGTCCTTGAATGTGAGAAGAACCAAACGTTGGTCCAGACAGCCTGGAACTATATGAATGACAGCCTTCGCACTAATGTGTTTGTGAGATTTCAAGCTGAAACCATCGCCTGTGCCTGCATTTACCTCGCTGCACGAGTGCTACAGATTTCGTTACCCTCTCTGCCGCACTGGTACCTGCTGTTTGGTGCCACCGAGGAGGAGATCAAAGATATATGTGTAACCACTCTGAAGTTGTACACAAGAAAAAAGCCAAATTATGAATTGCTGGAGAAGGAAGTGGACAAACGGAAAGTGGCTCTACAGGAAGCCAAACTGAAGGCCAAAGGACTGAATCCAGATGGCACTCCTGCTCTCTCCACATTGGGTGGATTCTCTCCTGGATCCAAACCATGTTCACCTAATATATTGAAAGCAGACGAGAAGTCTCCCAACCCTCAGATGCTTAAGGCCATGAAGAAAGAACCTGAAGATCGGCCTCAGGGCTCTAAGAGCCCACACAATGGACTCAGGAAAGATAGTAAGTTAGGTCGGAACAGTAGAAGTGCGAGTCGCTCTCGTTCCAGAACGAGATCCCGGTCCAGATCTCGCTCTCCCAGGCGACATTACAATAACAGGCGCAGTCACTCGGGCACCTACAGCTCTCGCTCCCGTAGCCGCTCTCACAGCCGCAGCCCATCTCCGCGACGACACGCCAACCACGGCCCTCCATCTCCCCTCCTGCCACACTTGAAGTCAAAGCAGCGCTCAGATGACCTGCACCAGCACAGCAGACACGGCCACAAGCGGAAACGCTCACGCAGCCGCTCTCGTTCCACCAGCAAGCCCCGTGAGCGGGAcagagagcgcgagagagagcGGGACCGGGATCGCGGTTCCTCTGACTTGGCGAAGAAGCACAAGCACGAGCGTAGCAGCGGAGGCCATCACCGCGACCGACGGGAACGCTCGCGCTCGTACGAACGCTCTCACAAAAGCAAACACCACAGCAGCAGCCATTCAAGCCACAGTCGTCACAGACGCTGAGTGTTTTCTTGTTACATCTGCGTGACTGCGAGCGAGTTTGTGTTTGATTAAAGTGGTCAGTGTTGACCTagttgtctgtttttatttttttttgagttctGTGTTATTTTGGCggtttagttttaaatgttgaaaggATATGAAACTACATATTTACAGTGTAAAGATGGGTTCAGTGTTGATGTAATATGGGAAATGCTTTGATTTATAAAAGCAATCTTTTTCAGAAGGTGGGAAAATTACTAGTTACatggaaaaatggaaatgttttcagGAAAGACACCAATACTTTGCACAGCTATggaaattaatacaaaaaaaatgttctacTGGCAGAAGAAAATTGGTTTCTCTGAAAATagatcatatttttttacaactggatgcagactttttttttttttttcttttctttttttctttgatcatGGTGACTTTGTTACACTGGTTTTTAGTCTGCACGTCTTCATGTCTgatttttactcaataaaaagTGACTTATTCCTACTGTCAa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0006396 RNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0019901 protein kinase binding molecular_function

KEGG:

id description
K23966 CCNL; cyclin L

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185293 lncRNA upstream 182075 10936365 ~ 11044066 (+) True G125480
TU185295 lncRNA upstream 305808 10898164 ~ 10920333 (+) False G125481
TU185294 lncRNA upstream 320579 10898164 ~ 10905562 (+) True G125481
XR_006253185.1 lncRNA upstream 376452 10845452 ~ 10849689 (+) True LOC122363043
TU185276 lncRNA upstream 439118 10785905 ~ 10787023 (+) True G125470
TU185365 lncRNA downstream 535 11234349 ~ 11237141 (+) True selenot1b
TU185379 lncRNA downstream 65189 11299003 ~ 11299260 (+) True G125540
XR_006253135.1 lncRNA downstream 73733 11307547 ~ 11309510 (+) False LOC122362586
XR_006253134.1 lncRNA downstream 73844 11307658 ~ 11309510 (+) True LOC122362586
TU185388 lncRNA downstream 109781 11343595 ~ 11344675 (+) False trpc6b
XM_043263958.1 mRNA upstream 1633 11218538 ~ 11224508 (+) True ankrd67
XM_043263959.1 mRNA upstream 1633 11220253 ~ 11224508 (+) False ankrd67
XM_043264845.1 mRNA upstream 19545 11137051 ~ 11206596 (+) True veph1
XM_043216907.1 mRNA downstream 517 11234331 ~ 11237147 (+) False selenot1b
XM_043264102.1 mRNA downstream 3719 11237533 ~ 11240065 (+) True tsen34
XM_043264431.1 mRNA downstream 6813 11240627 ~ 11244692 (+) True bcl7bb
XM_043264427.1 mRNA downstream 11507 11245321 ~ 11262070 (+) False baz1b
XM_043264430.1 mRNA downstream 11507 11245321 ~ 11262070 (+) False baz1b
TU185314 other upstream 256374 10968085 ~ 10969767 (+) True G125496
TU185257 other upstream 388865 10824974 ~ 10837276 (+) False G125461
TU185261 other upstream 388865 10824974 ~ 10837276 (+) True G125461
TU184804 other upstream 1860653 9359436 ~ 9365488 (+) True G125192
TU184604 other upstream 2689193 8176353 ~ 8536948 (+) True G125041
XR_006246968.1 other downstream 517 11234331 ~ 11237147 (+) False selenot1b
TU185364 other downstream 535 11234349 ~ 11237141 (+) False selenot1b
TU185801 other downstream 1575636 12809450 ~ 12822781 (+) True G125830
TU185810 other downstream 1646774 12880588 ~ 12884612 (+) True G125836
XR_006246942.1 other downstream 1683412 12917226 ~ 12925468 (+) False napab

Expression Profile