RNA id: XM_043264644.1


Basic Information

Item Value
RNA id XM_043264644.1
length 3581
RNA type mRNA
GC content 0.48
exon number 17
gene id rasgrp4
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 548817 ~ 566665 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGTATTTCAAATAGGGACTTGTTTGTATTGAATGCAGTTAGCTGTTTGTTGTGATCGTGCTGATTTTGACAGCTTTTTGAGTCTacagtttgaattttttttctttatttttaatgccttGCCGTCGAATAGGggttcttttatttattgttttggttaACTCTGTGCCCTGTGGTTCACATTCTCTGGTAATattcagagagaaagaaaagagggggtgtgtgagagagagtgagcgagCGAGTGAGTAAgtgaaagagagatagagagagagagagagaaaactctGAGCCGCAGCAGCTGGTTTTCAGGTTTTACGTTTTGACAGCCGTGACTGAAGAGCCACTGTACGTCTCCCAAGCCTGTAAGAGGTCACTTAGTACCTCTGGCTGGAGGAGAGAGACTGCGAGATACCCGATGGGACAAGTAAAGGTTTAAGCAGCCCGGGGGACACCGACAGGACACCGGTAGACACCATGAATCGCAAGGAGTCTAAGAGCAGCAGGAAGTCCCGTCAGGAAGGAGGAAGTGTGATAAAGTGCAGAAGACCAGTGCAACGGAGGATGACATGCCCCAGCCCTCATGAGATCAGCCGGGCTCTTCAAAGTCCACCGGTTCACTCTTCTTTCCGCTCCGCCAGCCTGGATGAACTCATCCTCCGCTGCCTCCACTGCTTCGactCAGATGGGAAGCTGATCAGAGGGACGCAGCTTGTCCATATGACCCTGATGATGCATAACTGGGTCGTACCATCACACATTTTTGTCCAAAAGCTGCTTTCTCTATATAAGGATTGTCCTGCGGAGAAAAGGGAACAGAGGCGCGTACAAATCTGCCACTTGATCAGGCAGTGGATTAATCAGTTCCGGATAATGTTTGAGGTGGATCCTCTGTTAGAAAAAGTCATGGGAGATCTCTGGGCTCTGGTCAGGGGCGACGTAACCGGTCCACCCGATCACCGCATCATTACTCCATACAACAGTAATCCTCCAGTGAATGTTTCCCAGACTCCCTCTCCCTCTgtaaagaaaaggaaagtttCCCTGCTGTTCGACCACATGGAACCAGATGAGATGGCCGAACACCTCAGCTACCTGGAGTTCAAAAACTTCTGCAACGTCTCATTTCTGGACTACCGCAGTTACGTGGTCCATGGCTCTGTGAGGAATAATCCGGCGCTCGAGCGCTCCGTCGTGCTCTGCAACGGAGTCTCCCAGTGGGTCCAGCTCATGATCCTCAACAAACACACCTCACAGCAGAGAGCAGAGGTCTTCACCAAGTTCATTCATGTAGCACAGAAGCTGAGAGCCCTACAGAATTTCAATACCCTGATGGCGGTGATAGGAGGTCTGTGTCACAGTTCCATCTCTCGTCTCAAAGACACAGCCAGCCTGCTGTCCTCTGATGTCACAAAGACTCTCAGTGAGCTCACGGAGCTGCTGTCGTCCTACAGCAACTATTCAAACTACAGGCGCGTATACAACGACTGCACTGGATTCAAGGTGCCCATCTTGGGCGTTCATCTCAAAGACCTGATCTCCCTCAACGAGGCGCTGCCAGACTACCTCGAGGACGATAAGATCAACCTGGGGAAAATGCAGCATTTATACAGCAACATCAGCGACCTGTTGGCCATCCATGACTGCACCCCGCCGTTTGAGGCCAACAAAGACCTGCTGCACCTGCTAACGCTTTCTCTAGACTTGTGTTACACCGAGGACGAGATATATGAGCTCTCCTACACCAAGGAGCCCAAGAACCCCAAAATTCAGCCCTTAGCTCCGGTGAAGCCCCCGGTGGTAGCCGAGTGGGGATCGGGAGTGACTCCGCGTCTGGACCCCGCCACCATCTCCAAACACGTCAAGCAGATGGTGGATTCTATCATGAAGAATTATGATTTGAACATGGACGGCTACATTTCTCTGGAGGACTTTGAGAAGATCGCTGCAAACTTCCCCTTCTCTTTCTGCACACACGAGAGCGATAGGGAAGGGGAGATCAGTAGGGAGGAAATCACTTCATATTTCATGCGTGGGATGTCGGTGTGCGCTAAACTCGGCTTCAACCTCCACAACCTTCACAACTTCCATGAGACCACGTACAAAAGGCCCACGTTCTGCGATACCTGCGGAGGATTTTTATGGGGAGTCATAAAACAAGGCTACCACTGCAAAGaCTGTGGAGTAAACTGTCATAAGCACTGTAAGGATGTGGTGGGAATGGAGTGTATGAAGAGGTTCCAGGTGACCAGCAGCTCTTGTCCCTGCACCCCGGGCCCCGTATCAGGCCTCCACACTAAGGGCAACAGCTGGAGTTCTGAAGAGGAAACATTTGTCTTTCCTAATGGAAATGGATCCGAACACTCTAAAGGCCAAACTTCATCAGACAGCGACGCCGAGGCCACACTATCCGACAGGTCCACTCAGACGGACCCGGGGGTTTGGACACCGGTGGCCAAACGGAAAGATCGCCTCCCTTCCCAGAAACAACACCCACCCCTTGAAAAGAAAGCTAATTTGGTGAGCGAGACTGGGTAGCATCTTCTGAGACTAACGTTACCTGCCTGCCTTATCATCCCAGAGCGCTACGCTACCGGCAAGGGTGCGAGGTTCATCTGCCCCTAGTTCTCTCCTACAGGAGAAAATGGATGAACTGAAGCTGAACAAAGATAAACGAAAGGAACCAGACTGAACTAGTCTGTGCATGTGGccgtttgtttgtgtgtggtgGAACTGTTCAATACACTGGACAGAAAAGACTGAAGAACATGTCCTCATCTTTCTCGCCAACTGTCTTGTTCTATTGTCTTCAACAGATTGTTCATGACGTTCATTAAATGTGATGAAATTCTAGCCAGAAGGGAATTTATTTAAGGAATTACAGATGGCCCGCTTCCTCTGGGCTCTTTAAAACCTTGTCGTGGATCTGTACGGTAAGAACTCTCTATGCACCAGCATCTCAACTGCCAGAAAAGACCAGATCAATGGACTTCACGTCTCCACAAGTGCTCAAAAGTGGACTGCTGCATCATGGATCTCACTACCGCTCGTCGAGACGGACAAAACTGTTGCCTTACTATTTACACTGATGGAAAAATTACACTGTGACCAACTGTATTGAACTTGAACAGCAAGAATGTACCTCCTCTGTTAAGGGATGAGATTTCGGTGCTGATTTAATACCCACAATGCATCACTGTGCCTTATGTAATGAACAATTCATTGAGTAGGAGACAAAGGGTGTTATATCACTGTTTAGATCAAACAATAGTCCTGTCTCAGTTCAAAACGATCACAATCTGCTTTGTTAGTGCTCGTGTCCATTCGGTGCATCAGAGCATTAATGAAAAAGAGCGGGAAAGTGACATTGAGGGTTGATTCAAACAAACACTGTGGacctattttaaattgtttttctaATATGTTTTCTGTTAGATCTTTTGTCAACTCCAACTTGAATGTCTGTTTTACTAAATCTTGAGTTTAGgctatagatttttatttattgaggaATGATAAAGCTTAAGTATTTTCCATAAAGCACTGCCTGATGtgattaaaatatctaaattaaaaaGCGA

Function

GO:

id name namespace
GO:0051056 regulation of small GTPase mediated signal transduction biological_process
GO:0001945 lymph vessel development biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K04350 RASGRP1; RAS guanyl-releasing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182193 lncRNA upstream 19199 529398 ~ 529619 (+) True G123312
TU182176 lncRNA upstream 36186 511298 ~ 512632 (+) True G123301
TU182152 lncRNA upstream 72417 464104 ~ 476401 (+) True G123282
TU182402 lncRNA downstream 283988 850653 ~ 919977 (+) False G123422
TU182403 lncRNA downstream 324105 890770 ~ 919977 (+) True G123422
TU182468 lncRNA downstream 456440 1023105 ~ 1051430 (+) True G123472
XR_006246948.1 lncRNA downstream 529798 1096463 ~ 1129331 (+) True LOC122323124
TU182487 lncRNA downstream 529798 1096463 ~ 1128705 (+) False LOC122323124
XM_043264062.1 mRNA upstream 97609 446701 ~ 451209 (+) True c18h19orf54
XM_043264799.1 mRNA downstream 14081 580746 ~ 596414 (+) False ppp1r13l
XM_043264802.1 mRNA downstream 14081 580746 ~ 596414 (+) False ppp1r13l
XM_043264800.1 mRNA downstream 14393 581058 ~ 596414 (+) False ppp1r13l
XM_043264801.1 mRNA downstream 15035 581700 ~ 596414 (+) True ppp1r13l
XM_043216628.1 mRNA downstream 48924 615589 ~ 638864 (+) True tmem91
TU182087 other upstream 439986 108369 ~ 108832 (+) True G123243
XR_006253182.1 other downstream 248099 814764 ~ 823177 (+) False LOC122362993
XR_006253178.1 other downstream 478546 1045211 ~ 1054735 (+) True tmem123
XR_006253179.1 other downstream 478546 1045211 ~ 1047991 (+) False tmem123
TU182587 other downstream 998761 1565426 ~ 1571931 (+) True G123568
TU182722 other downstream 1435121 2001786 ~ 2002290 (+) True G123664

Expression Profile