RNA id: XM_043264708.1


Basic Information

Item Value
RNA id XM_043264708.1
length 2897
RNA type mRNA
GC content 0.51
exon number 10
gene id depdc7a
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 13396211 ~ 13406293 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTTGATAAGAAAACCGGAACAGCAGCCAGGTACTGTGACCTTGCTGACAGGTTCTCCGGCATGATTTAAACCTGAGCTGTAGGAATGTGTTGACTCAAGAGCAGAGAGAAAACGCTTTAACCTGTGACACAGGTTTACACAACAACATCATCACTCATGAAGAGAACGCAGAAGCGGCAGAACCGGTTCTGACGACACGCGTGTGTTTTAGGTGGTTGGAAGCGTAACTTTTAAGAAGagcttatttagtttttatagaCTTTTAACTCAATGCTTTCTGCATGAGGTCAACTCTGCTCTGGAAACTTCTCATAGTCTGTTCTGACTGGGTACTCTCCTACGGCTTTCTGTGGCATCCCGGACCTCGAAAGTGTGCTATCTATGTCCTTTAAACGTTTTTATGCACTAGTTTGCATGGCAGGGCGCTGGAATTGGATTCGTGGAGGTATATGGATGATTGCGGTTGTCTGACTGGCGCATACCGTTTGGAtcagagtgtttgtgtgtattggaATGCAAAAGTGCTCTGTGGCTGAGGGGGACAGTAAAAGGGCTAATGACTTGGGAAAAAGGAGTGAATGAGACCCCCTGAAGAGTGTGAAAGCTAGCATTGAGAGGCAAATTCTCTCGTACAATCCTTTGGCCTGGAATCTCTGACAAAGCATGATGAGGAAGAGCCGTAGAAAGGGACTTTCTAGATAAATCCCATCCCTCCCCCTTCTAACCGCTTTCTTTACCACGTTTAGCTATTATCTCAACACTGACACTTACGTACGAATAATACAGTTCAAGCCTACTCTTCTTTTGATGCTCGGGACTAGGTTTTGGTTAGGATACATGTCATTGCTGGTGAGCTCAGTGCTTAAAATCTCTCATTTGAGTTTCGGTGACTGCCTCAGTGTAAAGGTGCCATTATTATGCTAACGAGCTCTGGACTGCCCCCGTGACGTCACGGCGAGGGTGTGAGAGCGCGCGGGCCGGGGCTGTGGACGAGTTCGGAGCGCGCGAGCGTGAACCTCAGCCGCTCACAGCGCGAGACCGAAGGGGATGCTCCGCTTCCATGCAGCGGCGGCGCGACACGACCGACTTTAACCCCGAGCACATGCACAGACCTCCAGAGACAGGGATGGCTGGGAAGCCGTTCCGAGCCACGTACATCTGGACGAACATCATCAACAACCTTCAGACGCAGGTGGAGGTGAAGAGGAGACGCCACAATCTGAAAATCCACCACGACTGCTTTCTGGGCTCCGAGGCGGTGGACGTGGTTCTGGCTCACATCATCCAGAGCAAGTTCTGCGGAGACGCCGAGGTGCCTCGGTCCAAAGCGGTCCGCCTCTGCCAGGCCCTCATGGAGGCCAGAGTCTTTGAGGCGGTGGACACTAAGGTGTTCGGGAAAGAAAAGAGGCAAGCCAGGTTTGAGGACAGCGGCTGCAGCCTGTACAGGTTTCTGAACAGACCGACCCCGAGCGCGTCCAGCTCAGAGACCATCGAGAGTGGGTACGATTCTCTCAGGAACGCAAACAGTCCACCCTACAAGAGgaAAGAAGATTCGGTGTATTCAAACAGCTCGCCGGTCAAAACGGACAAGTCCCTCGAGGATGTGTTTGGAAATCTGAACATGAGCACGACCGTCTCGCCGCAGATGATGAATCTGGGGTTGTCGCAAGAACTGATGGATGAAGTATGGCAGCAGCAGACGGTGCTGAGGCTCCTCCAGCTGATCGAGCTGCCGCTTCTGGAGAGTCTGCTGGAGGGCCAGGAGAGCCCTCGCCCGTCCCTTCACAGCATGGACAGCGACCCAGACCTCCTCTACACCAGCAGCTACCTGGACCGCGAGATCCTCAAGGCCTTCAGCGAAGCTCAAGCGGATAGCTGGTTGTCAGCGGCCGTGGACTGTCTGGAGTTTCTTCCCGATCAGTTGGTGGTGGAGGTGAGCCGAGGACTGGCCAAGTGTGCGGAGGAGACGTCTCAGTACAAGCAGCTCCTGTACGGAGCCCTGGTCCAGCACTACGGCCAGTCCGACTACCCCCCGCTGCTCAGCAACCACGTCTTTGACATACACTCGGGTGTCTCCGAGCTGCTCGtgaatGGGAAGCGGGAGCAGGCTCTGGAGTCTCTTCAGCTCTGTCTGAAGCTGCAGGATTCACGCAGCAGAGAGGAGCTCCGCAGGTTACTGCGCTTCATGGCCCTCGCCGCCGGCCCTCAGGAGATCAAACTACACAAAGAGGTAGAGAACAGAATGGCGGTGAAGAGGGCGTTCTCGAATGCTATTGTGTACGGGACCAAACTAGCCAAAGGAAAGGTTGATCTTCTGGTTCTTTTCATGATGGACAACCACCATGACCTCTTCAAGATTCCCGTCACGTTGCACAAACTTGTAAGTGATAAACTGGCCGGCATCATCAAAGGATCAGACCCCGATCTCATGACAGGAACGACGTACTGTCAGCGTCTGAGCGGAAAAGATTACCTGGAAACGGTGCAGAAAACGACCAGAGAAGAGTTGTGGACGTTACTCAAAACCATTCACGAGAACTCCAAGCTCTCTCTGAAAGAGAAGCGCCGTCTGCTCGGACAGTTCTACAAAGGACACCCCGAAATATTCGTGCAATATTTTGGCAACAGAATATccaatgtttatatttaaagatacgcggttcatttttttatatgtatgtataatatgtaaaaagtattgtaaatatgtgtgtatttataccgCTGTTATGTCAAATGAGATCTGTTGATCGTTTTTCTATTCTTCATCAAagatatgatattatattaccACGCGCTGCCCAGAAAACAACGTTCTTAGAACACGGTCCTACGTTAAAATACttcagaaaaactaaatgtgtCTTTCGAAGAATAAAACGGGTTACAAAAGTGA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185895 lncRNA upstream 25431 13369713 ~ 13370781 (+) True G125887
TU185894 lncRNA upstream 26701 13367416 ~ 13369511 (+) True G125886
TU185889 lncRNA upstream 44482 13350491 ~ 13351730 (+) True G125881
TU185887 lncRNA upstream 49275 13346678 ~ 13346937 (+) True G125879
TU185885 lncRNA upstream 57146 13337754 ~ 13339066 (+) True G125877
TU186228 lncRNA downstream 136960 13543253 ~ 13543775 (+) True G126098
XR_006246953.1 lncRNA downstream 205766 13612059 ~ 13692558 (+) False LOC122323141
XR_006246954.1 lncRNA downstream 225783 13632076 ~ 13693855 (+) False LOC122323141
XR_006246952.1 lncRNA downstream 225783 13632076 ~ 13692558 (+) True LOC122323141
XR_006246951.1 lncRNA downstream 225783 13632076 ~ 13692558 (+) False LOC122323141
XM_043264782.1 mRNA upstream 4533 13377206 ~ 13391679 (+) True qser1
XM_043216487.1 mRNA upstream 20005 13371702 ~ 13376207 (+) True prrg4
XM_043216713.1 mRNA upstream 29499 13362547 ~ 13366713 (+) True eif3m
XM_043264608.1 mRNA upstream 58770 13312402 ~ 13337442 (+) False kifc3
XM_043264303.1 mRNA downstream 17564 13423857 ~ 13426248 (+) True LOC122362741
XM_043216745.1 mRNA downstream 20751 13427044 ~ 13430749 (+) True rpl35a
XM_043264677.1 mRNA downstream 25602 13431895 ~ 13458567 (+) True abcc5
XM_043264678.1 mRNA downstream 25602 13431895 ~ 13458567 (+) False abcc5
XM_043264679.1 mRNA downstream 25985 13432278 ~ 13458567 (+) False abcc5
XR_006253129.1 other upstream 177866 13216657 ~ 13218346 (+) False LOC122362547
XR_006253128.1 other upstream 177875 13216484 ~ 13218337 (+) False LOC122362547
XR_006246961.1 other upstream 440267 12946841 ~ 12955945 (+) False glb1l2
XR_006246942.1 other upstream 470744 12917226 ~ 12925468 (+) False napab
TU185810 other upstream 511600 12880588 ~ 12884612 (+) True G125836
TU185911 other downstream 20804 13427097 ~ 13430765 (+) False rpl35a
TU186277 other downstream 272752 13679045 ~ 13682571 (+) True G126132
TU186336 other downstream 503271 13909564 ~ 13912800 (+) True G126175
TU186297 other downstream 533802 13940095 ~ 13941369 (+) True G126146
TU186575 other downstream 1420588 14826881 ~ 14828292 (+) True gemin7

Expression Profile