RNA id: XM_043264718.1


Basic Information

Item Value
RNA id XM_043264718.1
length 1547
RNA type mRNA
GC content 0.47
exon number 11
gene id calb2a
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 3945863 ~ 3954460 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCATCTCCTCCAGCAGCTTTCCCAGCAAGTGCGCGAGTGCTGAGCCATGAAACGGTGATGCTGGAACTACTGCGCCACCCGCATGAGCGCCAAAGGATTGCAAGCACTCAGCGCATTTAAAACCCCCTGCAAAGCACTGGAGGACTTACAGTGCGAATTTGACTCTGACTGAGTAAAAGTTCGCCCGGGATTTTCTTGTGGACAGTAGGACAGATACGCGAAAACATGGCAAACAAAGGACAGCAGCCTCCCTACCTTCACTTGGCAGAGCTGACCGCATCCCAGTTTCTGGATATCTGGAAACATTTTGATGCAGACGGAAATGGCTACATTGAAGGTAAAGAGCTTGAAAACTTCTTCAGTCAGCTGGAGATTGCGCGGAGAGGGGCTGGTGTGGACCCATCAAACGCAGCCTTTAAAGAGAAGATGACAGAGTTCATGCAGAAATTCGACAAGAACAAAGACGGGAGAATTGAGATGTCTGAGCTGGCTCAGATCTTGCCCACAGAAGAGAACTTCCTCCTCTGCTTCAGACAGTTTGTGGGATCCAGCACCGAATTCATGGCTGCCTGGCGGAAATATGACACAGACCGCAGCGGCTTCATTGAGGCTAATGAACTTAAGGGCTTCCTCTCTGACCTGCTTAAAAAGGCAAACAGACACTATGATGACCAAAAATTGCAGGAGTACACACAAACAATACTTAAGATGTTTGATCTGAATGGCGATGGGAAACTGGGTCTGTCCGAAATGGCAAGgcTTCTGCCGGTTCAGGAGAATTTCTTGTTGAAGTTTCAGGGCGTCAGGCTGACTGCTGAGCAGTTCAATGCCATCTTTGCATACTACGATAAGGATGGAAACGGCTATATCGACGAGCAGGAGCTGGATGCTCTCCTGAAGGACCTCTATGAGAAAAACAATAAGGAGGTGGACTCTAAGAGCCTGAATGGTTATAAGCAAAGCATCATGGCGCTGTCAGACGGGGGAAAACTGTACCGCACCGAGCTGGAGATTGTCCTTTGCCGGGAGCCCATGCTGTGAACCGAGGCTTCCTGACCTCCATCTCAGCTCTGTTCCAGCTGCCTGAATACTGTAACCGTGTGCATGTGCCGGGCACCCCGTTCCCCTCCCATCCCCCTCTCCAAATGAGTTCTGGATGAGTGTGCACAGAAAAGCACAAAGTCTCTCTTCTCCCCTTCTTTCCTTCCCTTTCCCACACCCCGATCGCCACTGCTTTCCTTTGCCTACAAACCGCAGCTACTATGATGCCCTCTGCTcaatttttaaactatatatttaaagaagAGTCTTTCTGAAAGAGTAGCAGACTTACGGTATAATACGGTTAGATGTGTGATATATTCATTTGGAGTGCTTGGCTTCAAATACTTCTGGTTTCTTCCCTTTACGTTTGGTTTCCTCTTCGGTTTGTTTTTGacctcatttcatttcattcctgCCCAATTATGTTTGGGTTTGTGGTGTTTTTTGGCTGATACTGTTTAAGGATGTAACTAAGAGCATTAATAAAAGTTATGTGATATAA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23908 CALB2; calretinin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183416 lncRNA upstream 52477 3869668 ~ 3893386 (+) True G124121
TU183400 lncRNA upstream 202111 3743477 ~ 3743752 (+) False nrn1la
TU183364 lncRNA upstream 322710 3622874 ~ 3623153 (+) True G124092
TU183311 lncRNA upstream 456947 3463911 ~ 3488916 (+) False G124046
TU183369 lncRNA downstream 154270 4108730 ~ 4109140 (+) True G124097
TU183367 lncRNA downstream 154966 4109426 ~ 4113057 (+) True G124095
TU183473 lncRNA downstream 171909 4126369 ~ 4126773 (+) True G124158
TU183475 lncRNA downstream 179618 4134078 ~ 4134586 (+) True G124160
TU183476 lncRNA downstream 180923 4135383 ~ 4135600 (+) True G124161
XM_043263950.1 mRNA upstream 6919 3933543 ~ 3938944 (+) False pnp6
XM_043263949.1 mRNA upstream 6919 3933546 ~ 3938944 (+) True pnp6
XM_043265029.1 mRNA upstream 146914 3793785 ~ 3798949 (+) True slc38a8a
XM_043265028.1 mRNA upstream 153629 3777908 ~ 3792234 (+) True mbtps1
XM_043216923.1 mRNA upstream 169372 3769488 ~ 3776491 (+) False fan1
XM_043264716.1 mRNA downstream 2625 3957085 ~ 3963154 (+) True got2a
XM_043264719.1 mRNA downstream 8806 3963266 ~ 3966069 (+) True si:dkey-12e7.4
XM_043264149.1 mRNA downstream 11912 3966372 ~ 3971101 (+) True syt19
XM_043216751.1 mRNA downstream 48496 4002956 ~ 4005569 (+) True si:dkey-12e7.1
XM_043216712.1 mRNA downstream 53015 4007475 ~ 4014541 (+) True anpepa
XR_006253139.1 other upstream 202107 3719888 ~ 3743756 (+) False nrn1la
TU183320 other upstream 391173 3511966 ~ 3554690 (+) True tmem170a
TU183022 other upstream 1640285 2302526 ~ 2305578 (+) False plin1
TU182722 other upstream 1943573 2001786 ~ 2002290 (+) True G123664
TU182587 other upstream 2373932 1565426 ~ 1571931 (+) True G123568
XR_006246974.1 other downstream 786408 4740868 ~ 4740965 (+) True LOC122323235
XR_006246980.1 other downstream 786795 4741255 ~ 4741324 (+) True LOC122323241
XR_006246981.1 other downstream 787094 4741554 ~ 4741651 (+) True LOC122323242
XR_006246975.1 other downstream 787847 4742307 ~ 4742435 (+) True LOC122323236
TU183924 other downstream 805177 4759637 ~ 4793251 (+) False LOC122322928

Expression Profile