RNA id: XM_043264801.1


Basic Information

Item Value
RNA id XM_043264801.1
length 3749
RNA type mRNA
GC content 0.49
exon number 13
gene id ppp1r13l
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 580746 ~ 596414 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAAAGAgcaccttcatgtcatttctGAGCAGTGTTGGGAATGAGTCCAGCAGCACACAGCCCTCATTTACCATCTGACTAAAGGCTTTCTGAGCCAGCCCAACTGCATATCTGTCTTGCCCTGCTTCAACTTGTTCTGATTTTTCTGGCTCCCACATAGATTCTCTGGCACTTGTAAACACAGACAATTTGCATGTAGGTTCAACTGCATGCCAGCCGAACATTGTGTGCGCTGCGgtttatgctttaaaagttaGATGCGGCCAGGGTGGACTTCTCGCGTCTTGGATATCTTGTGCGATTCACGAGGAATGTTAAGCTTGTAATTTTGAAGGCTTGAGAGATTCCGGAGGCAAATGTTACTTGGACTCTTTAGAGCGCCACAGGGCCGCGCAAAAACAAACAGGAGTTGCGAAAAGAACCAGTATCGCGGTTCTCGCAGAGAGAACTGTCTTTTTGAATGAATTGGAGGTCccacaaacagaaacacaaacaccaTGAACTCCCAGGGCAGCTTTGGCAGCAGCTTTATGTttcAGTCCATCAACGATGAACTGAGCGCATCTCTGGCCACGGCAGATGAGCTTTCACGGGAATTCAACTCTCTCCTGTCAGAAGCCACTCCTGCTGTGCAAACCACTACTTCAGAGAGTTCTGGCCCCAAAACCCAGAGCAGCAGCAACGGCAGTTTGTACAACGCAAACAAGAATGGAAGCTCCTCCTTTTCCCAGAGCTCCATGAGCAGTCTGAGCTCCGATTCCGGCATCAGCAGAAAAGAATCCAACCTGGACCTTCCTCCCGCTGTCAAAATTCGATCTTCATCTCCTGCACCTCTCCTAGACAGTATGAAATTCAAGCCTTCATCTCCAAGTCCTTTAACCCAGCAGCATTCCTCTTTTACAAACCGTAAAGACAGCTCGGATTCCCGACATCCCTTTGACCCAATGACTCCCCCTAACATGTCTCCTAATACACTAAGACGAATGACACAGATGCCGCTGAGGCCTCAAGATCGAAGCACAAGGGGATCTTTGAGCTATGGGGAGCTATCCAGCCCTACCTATGAAAGCAAAGCATCTCGCACCTCGCTGCAGCCCCCAGCAAGCCCTTTGTCTTTGGCTCCCAGGTCTCCGAGGTTGGATCGAGCACCTTCTCCTCAGCCTTTCAGTCAACCAGCAGTCAGCACGCTGCCACGCAACTTCCACCCATTCAGACCCTTAGAAGATGGAATGCAGAGGCAAAAGAACCCCTCTAAGTGGAATGAGAGCGACCTTGATGCGTCACACGACAGAAAGCCTCACCACACGTATGACAAGAATGAATGGATCAGACCATCTGTACCCAACAGCAACTGGAAAGAATCAAACCTGGACGCACCTCCTGCCGCCAAGAAGGATACTCTGCCCCGTTCGCTCCCATCATCTCACAGCTCGCTCCCAAGGAACACTCGTATCTCAGTGCCCCCTGAACTCGCCTCGAGCACCAGCTCACCTTACGGCCCTCAGCCAATCATTTCCCGTATCTCCATTCCACCTGCAAGCACTGGAGTGCGTAAGCAGCGGCCCATCCCGCTTTCTGTCATCATGAGGCTCCAGAACCCCTACTATATTGCGGATGTTAGCAGATACGCCCCTGGCCTGATGGGAGAGCCCCAGCAAGAGATCTTTCGCCAACATCTTCCCCTGCCCCGAGAGTACCTGCGGCAAAATCAGACACCTCAACCTCAGCAACCTCAGAGACAACCTCAGTACTACAGAGAAGcAGTACTTCACCCTGGAGATGTTGATGCTGAGCTTGAGAGACAGGACAAAACAGAAGGCCCTGACCAAGGCTTGAAACTAGAAGAAGAGGTTAAAGTGGAGAATACAGAGATGCCTCCTCGCCCTCTCAGCCCCACGCGTCTGCAGCCCGTGGTGGCCCCACAGGCGGAGTTGGACACCGACCTGGACGAAGTGATGCGCATCCGGGCCGAGTTCCCCAGGGCCCTGAAGAAACGCGGCTCGGTTGAAATTCCTCAGACCCTGCACAACCTCCCCCTCCCCCAATCGGCCAACCATTACAAGCAAATGATCAATAAACTGTTTCGCAGGAAGACCATCCGTGTCAAAGAAGAGCCAGCTGGTGAAAGTAGCAGCTCTTCAGACGGGGAAGACTCTTCTAAATCTGCTGTATCCGTAGTTCCGGTACCAATCACAGAGATACACGTCTCTTCTGAACAGAAGgGTATTCACTCTATCTTGCGGAAGGGCAGCAAAGCCAATAAATCCTCCAGCCGTAGGGCTCACCTGAGCCCACTGGTGCTGATGTTGGACGGGTCTTTAGTAGGGGAGTTAGAAACTGTACAGAGGGCCGCTCAGGAGGTGAGTGACCCAAGCCAGGCTAACGATGAAGGCATCACGGCGCTTCACAACGCCATCTGCGGTGGACACTTCTTAGTGGTGGAGTTCCTCGTGCGGATAGGGGCTAACGTCAGCGCTCCAGACAGCCATGGCTGGACGCCCTTGCACTGTGCCGCATCCTGTAACGATCGGCAAATGTGTGAGTTTCTAGTGCGGAACGGAGCGGCGGTGATGGCCGTGACGGACAGCGACGGGGCCACAGCCGCGCAGAAGTGTGACCCCTACGCCCCGGGCTTCGAGGAGTGCGAGAGCTTCCTGAGAGgTATGGAGGAAGCGATGGGTGTGGAGAACAGTGGGGTGGTGTACGCTCTTTGGGGATATCCTGTCCAGGCTCCAGATGAACTGAGCTTCAAAGAAGGAGACATGGTGACCATCCTGCAGAAACCTGAAGGGGTGGACTGGTGGTGGGCTTCACTGTGTGGCAGGGAGGGCTTTGTACCAAACAACTATTTTGGGCTTTTTCCGAAAGTGCGGCCTAAATCGCTGTGCTGAACGCATCCGCAAACGCAGGCGACAACAGTCTGAATGCAGGTTTCACATGTGTATTCTCTTCTTCCTTCccttttaaattgtgtttaatgaAAAGATATGATGGGATTTTAAACGTGCACACTGTACAACTTTTCTCTATAGACCACCGTGACAAAGTCGCTTCACTGGGAATAGTGGTTATACAGGTTTATATAGACTTAGCCAGCTGAAAAATTGtcataaaaattgtataaagcTAAGCAGTCTATTTAATTTGAGAACAGGGATTAAGCGTATGAGCAAACTGAACTGGATTTAATACAGAAATGCATTAAGTCTCGTAATTTTGTTCGGAAAGGTTTGTTCTTTGTCTTGACTAATGTTTTTCAGCACTGAGCAGGAAGGAAATTCTTCAGACTATCAGTAttgcttttgtttatgaatgCTTTGCATGCAAGTGCATCTGCTGTTAATCAGTAACGTTGCATAGatacaaaaaaagttgtttcagaaatgtatttgaataacTCGCGTCCTAACTCAGCTTTGGATTATTTACAGTATTCCACGCCAAAACGTTAGCCTTTTTTATGTAACTTTTAAACGTGTTTTTCCTGTCTGTTTTCACAGTGATCTTTatgtattatgaaatattgaGAGAAAGTTTCCTTCTCGAAACAATGTACTATCCATGTGGGTTGTGAATTACATATTTGCTTTGATGTGAGGGAAGTTTGTTTtagaggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttatttgcctCGTTGAATCCACTGACTGTGACTGTTAAGATAGATTGTTACTCTCTGTAATACTCTTGCACAAAAggataataaatactaattgtAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182193 lncRNA upstream 52081 529398 ~ 529619 (+) True G123312
TU182176 lncRNA upstream 69068 511298 ~ 512632 (+) True G123301
TU182152 lncRNA upstream 105299 464104 ~ 476401 (+) True G123282
TU182402 lncRNA downstream 254239 850653 ~ 919977 (+) False G123422
TU182403 lncRNA downstream 294356 890770 ~ 919977 (+) True G123422
TU182468 lncRNA downstream 426691 1023105 ~ 1051430 (+) True G123472
XR_006246948.1 lncRNA downstream 500049 1096463 ~ 1129331 (+) True LOC122323124
TU182487 lncRNA downstream 500049 1096463 ~ 1128705 (+) False LOC122323124
XM_043264644.1 mRNA upstream 15035 548818 ~ 566665 (+) True rasgrp4
XM_043216628.1 mRNA downstream 19175 615589 ~ 638864 (+) True tmem91
XM_043216630.1 mRNA downstream 19175 615589 ~ 638864 (+) False tmem91
XM_043216629.1 mRNA downstream 19175 615589 ~ 638864 (+) False tmem91
XM_043216586.1 mRNA downstream 47363 643777 ~ 652535 (+) True bckdha
XM_043264024.1 mRNA downstream 210952 807366 ~ 813395 (+) True siae
TU182087 other upstream 472868 108369 ~ 108832 (+) True G123243
XR_006253182.1 other downstream 218350 814764 ~ 823177 (+) False LOC122362993
XR_006253178.1 other downstream 448797 1045211 ~ 1054735 (+) True tmem123
XR_006253179.1 other downstream 448797 1045211 ~ 1047991 (+) False tmem123
TU182587 other downstream 969012 1565426 ~ 1571931 (+) True G123568
TU182722 other downstream 1405372 2001786 ~ 2002290 (+) True G123664

Expression Profile