RNA id: XM_043264838.1


Basic Information

Item Value
RNA id XM_043264838.1
length 2311
RNA type mRNA
GC content 0.43
exon number 14
gene id LOC122362995
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 10884597 ~ 10889401 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGAATTTAGGACAAACCCTCCTTGAACATCCAGCAGTCTGAACAGCAAGATTAGAGTGATCTGGTCAAAACAGCACGACGATATGAAGAAAACCAATGGCCAGATAGAGGAGAGAGGATACTGGGGTAGTAAAACAGAGTTTATTTTAGCTGTGGCAGGGATTGTGATTGGTCTGGGTAACGTGTGGAGATTTCCCTACCTCTGCTACAAGAATGGGGGAGGGGCGTTCCTGATCCCCTACCTGGTGTTTGTGGTTACCTGTGGGGTGCCTCTGTTCCTGCTGGAGACGGCTATGGGACAGTACACACAGGAAGGGGGCATTACTTGTTGGCGTCGGCTTTGTCCTCTGGCTGAAGGTATTGGTTATGCAGGACAACTGATTATTTTGTACAGCTGCATGTATTACATCATCATTCTGGCCTGGGCGCTTTTCTACCTCATTTACTCTTTTAGCTCCCAACTGCCTTGGGCCAGTTGTGACAACACCTGGAACACAGATGATTGTGTGGATCTTGCTGCAAACAATCTTAGCCGGACAATGCTGATTAATTCAACCTCTTCAGTTACTGAGTTCTGGagaaACAGAGTGCTGGTTCTCTCTGATGGGATTGAGGAGATCGGTCAGATCAACTGGGAGATTCTGCTGTGTCTTATTGCAATGTGGGTCATATGTTATTTCTGCGTCTGGAAAGGAGTCAAATCTACAGGAAAGgtggtgTATTTCACAGCTACATTTCCTTATGTGATGCTGCTGGTGTTGCTGATTCGTGGGTTAACTCTTCCTGGAGCTCTTCAGGGGGTTGTGTTTTACCTGTACCCTGAACCGGCCCGGCTCTTTGACCCACAGGTTTGGATGGAAGCAGGAGCTCAGATCTTTTTCTCCTACGCTTTGGGCACAGCCTCTCTTACTGTATTAGGAAGctacaataaatataacaacaactGCTACAGGGACAGCTTATGGCTTTGCCTTCTGAACAGCGGTACTAGTGTGGTAGCAGGTTTTGCTGTGTTCTCAGTTTTGGGTTTCATGGCTGAAAAGCAGGGTGTCCCCATTGACGAGGTGGCAGAATCAGGTCCAGGACTAGCTTTCATAGCTTATCCACAGGCAGTAGCTATGATGCCTTGTCCACAATTGTGGGctgcttgtttcttcatcatgATTATTTTGCTGGGGCTTGATACGCAGTTTGTTGCAATGGAAGTTTTCATGACATCAGTGATGGACCTCTACCCCTTGGTGCTGCGCAAAGCTGGACGTCGAGAAATATTCCTCCtgcttttctgcattttttgtttcttcagccAAATTGTCATGGTTAcagagGGGGGGATGTATATATTCCAGTTGTTTGACTATTATGCCTGCAGCGGAGCCTgtcttctttttctctgtgtgtttgagtctcTGGCCATGGGTTGGATCTTTGGGGCTGAGAGGATGTTTGACGTCATTGAAGACATGACCAGCTCTCGACCCAACTACATATTCATGCTGTGCTGGAAATACCTGACTCCTCTCGTGTCTTTGGTGTCTTTTGTATGTTCCCTTGTGAAGTACAAGCCCCTCACTTTTAACCGCTGGTATGTGTACCCAGACTGGGCGTATGCACTAGGCTGGTTGCTGGCCCTGTCCTCCATTCTCCTGGTGCCTGGATGGGCACTTGGACAACTAATTGTTGAGAAAGGAAGTTTAAAACAGCGTTGTCGTCACTTGTGCAGTCCTGACACAAACCTCCCTCTCATCTATAAGAAGCAACAAGCAGAAATACAAGAAAATACCACCATCACAGAGATGGAAAACTTAGTCAAGTCTACACaaactaatataaacataagagatagggaaaataaaatgtaaaacctgTGTATGTACTGAAAAACACTCTTTTCGTTATACTTGAGGTGCTCACTCTTGCTGTATATTTTCATTAGTCTTTAGtagtttttgtaatataatcaGCTGTTCGGCTATTGTAATATCATCATGTTATTGTGCTttcatgtgtttgtatatgtatatgtgtgtttgtgtgtatttttatcttttttttttattttgattgcttccactgtcctcatttgtaagtatatatatattaattaacatgaatggtagaataataaatataggcCTATTGACACAGTTGAGAAAGTTCTTccatcaatgtttttttcaaatgcctATAAAAAGTTATTGTGTCACTTAAAGCTTATTTACTCTGTAACCCAGTTGACATGAATGAGCTTACACTAATCatgtttaattgtgtttaattgccCAACAATAAATTGAAGGAGTGATGTTAA

Function

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006253185.1 lncRNA upstream 34908 10845452 ~ 10849689 (+) True LOC122363043
TU185276 lncRNA upstream 97574 10785905 ~ 10787023 (+) True G125470
TU185218 lncRNA upstream 246549 10632477 ~ 10638048 (+) False sema6dl
XR_006253145.1 lncRNA upstream 281751 10601124 ~ 10602846 (+) True LOC122362658
TU185086 lncRNA upstream 458757 10422822 ~ 10425840 (+) False gldn
TU185294 lncRNA downstream 8763 10898164 ~ 10905562 (+) True G125481
TU185295 lncRNA downstream 8763 10898164 ~ 10920333 (+) False G125481
TU185293 lncRNA downstream 46964 10936365 ~ 11044066 (+) True G125480
TU185365 lncRNA downstream 344948 11234349 ~ 11237141 (+) True selenot1b
TU185379 lncRNA downstream 409602 11299003 ~ 11299260 (+) True G125540
XM_043264839.1 mRNA upstream 6761 10872315 ~ 10877836 (+) True LOC122362996
XM_043264840.1 mRNA upstream 6761 10872315 ~ 10877836 (+) False LOC122362996
XM_043264841.1 mRNA upstream 6761 10872756 ~ 10877836 (+) False LOC122362996
XM_043264007.1 mRNA upstream 13801 10859813 ~ 10870796 (+) True vwa7
XM_043264900.1 mRNA upstream 123053 10744387 ~ 10761544 (+) False LOC122363031
XM_043264842.1 mRNA downstream 85 10889486 ~ 10897062 (+) True LOC122362997
XM_043264843.1 mRNA downstream 85 10889486 ~ 10895874 (+) False LOC122362997
XM_043264022.1 mRNA downstream 118189 11007590 ~ 11028729 (+) True LOC122362532
XM_043264391.1 mRNA downstream 208953 11098354 ~ 11134641 (+) True trip12
XM_043264397.1 mRNA downstream 208953 11098354 ~ 11134641 (+) False trip12
TU185257 other upstream 47321 10824974 ~ 10837276 (+) False G125461
TU185261 other upstream 47321 10824974 ~ 10837276 (+) True G125461
TU184804 other upstream 1519109 9359436 ~ 9365488 (+) True G125192
TU184604 other upstream 2347649 8176353 ~ 8536948 (+) True G125041
TU184436 other upstream 3706321 7177839 ~ 7178276 (+) True G124920
TU185314 other downstream 78684 10968085 ~ 10969767 (+) True G125496
XR_006253172.1 other downstream 336714 11226115 ~ 11231714 (+) False ccnl1a
XR_006246968.1 other downstream 344930 11234331 ~ 11237147 (+) False selenot1b
TU185364 other downstream 344948 11234349 ~ 11237141 (+) False selenot1b
TU185801 other downstream 1920049 12809450 ~ 12822781 (+) True G125830

Expression Profile