RNA id: XM_043264847.1


Basic Information

Item Value
RNA id XM_043264847.1
length 7433
RNA type mRNA
GC content 0.41
exon number 13
gene id veph1
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 11137051 ~ 11206596 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCCTACAGCTCTCCGGCGACTGGAGATAAAACTGCGTCCTGAGGGAGAAGTTGGCAGGAACGGCGAGCATCTCGCCTCGGActcttcattaaaaacaacatctcGCCTTCTTGCTTTCATATCGGCTGCGAAGATGCGCGCcgctggagagagaaaaggGGCCATGTCAAGTCATCGTGGTAACACAGAGCAGGGGCAGCCTGCTCAAGTTTGAGCCTGTCCCAGAATGCACCAGCTGTTCCGTCTAGTGTTGGGACAGAGAGACCTGTCCCGTGCAGGAGACCTCTTCTCTCTGGATGACAGCGAGATTGAAGACTGCCTGTCCCAAGCCTTGGAGGAAATCAAAGTCATATCCTGTTCACCAGACTACTTGACCAATGACAACGACCAAGCGGTGGTGGAGATCTGCATCACGCGCATCACCACAGCCATTAGAGAAACGGGTTCGATCGAGAGGCACGGAGCAGCTCTTGTGTCGTTGTGGGAGTCTTGTCTCGAGCATAACCTCCAGCCGCAGGGGAAAGATGAAGACACACCCCATGCCAAGATCGCCTCCGACATCACCAGCTGCATTTTGCAGAATTACAACAGGCCTCCAGTGATGGCATTAGCAGTCCCTGTGGCGGTGCGGTTCTTGCAGCAGGGGAACCAAGAGCTAAGCAGAAACATGTCCAGCTACTTGTCGCTTGCTGCCATTGCTAAAGCTGAACTCCTCGTGCAACACACTGAGGCCATCACCTGCAGCGTGCTGGGAGGCAATGCCATGCTGTTGAGAGTGCTGCCATCTGTGTATCCACGACAATCAGAGCCTATCCATCAACACATCCGTGAGCTGGTAGCAATGATGTCCCAGTTGGACCAGGCCGGCAGACAACACCTGCTCAGACTACTGCAGATGATCTCTGACCTTCACCCCTTGGTATTGTCGTCTTTGGTGCCATCGTTGATTGGTTATGTCAGTGACAGTGATCTCAGTGACACTGCTTTGGGTGTGTTGGTGAACGTGGCTCAGGCAAGCCCCGTCTCTCTCGTTCCCTTCCTGTCCACACTTAGAAATGTCGGTCAGAAGAACCCTTGGTTGCTGGGACACATCGCTAAGATCCATGGGGCAGTGGGTCTGATTAGTGAGGTCCAGGCTCGCGGGGCGCTGCAGTATCTGGTGTCACTCCTGGCAAGCATGGAGCACAGCGCCCATCACACACTACTGCTGGAGATCCGTTGCCTCACCGACCGCTATACCTCCATCCTGGGTGGTGGAGGAAAAGACATCTACCGCATGAGCAACAGTTTCACCGCCATCGCTCGACTGCTGGGCCGCAAGCTGGAGGCTGACAGCACACTTATCAGGTCAAAGAGTCTGGCTCTTCACGCTGTACGCACACGATCCATTAACTCTGACAGCAGTCCAGAGGGAGAAGGGGCAGATCTGAGCGCGGAACTTGATGTCTGTGAGGCCATTCCTAGTTTAGAGACTGGTTCTGCCCTCACGACCCTGCAGGAGAACCACAAACTCACAGAGACTGAACCTGACACATCTCCAAACAGTGAGGGGCAAAAGGTGGCAGCTGGAGATCCCCAGGAGGGAGATCGACTCTGGATCCACCTAAGAGACAACATGGAAGAAATCAAAACCTTCTGTGCAGAAATGATCAAGCAAATCCCCATACCTGAGCACTGTGTCGTTGAAGACTCACATCATGGCTGTGTAGCCAAGCTGTCCTTTTCCTGTCCACTGAAAGGACACTACTGCCTGTACGGAAAGTCCTGTTTCTCACTGTGTAGCCGTCAGCCACACCTCTGGATCCATATCATGCTACTGGCCCTGCAGAGTAAAGTGAGCGAGGCGTTGTGCTGTCAAGATGAGTGTGTCATCCAGCTGAGGAAACTTTGGGAGAAAACACAGCTGAAGGGAGCTCACAGCTTTGAGCTGGCCATGACCCAGACAACTGTTCCTCACAAGAAGGATGTGGACAGTTTGCAGATGTATCTGGATGAGGTTCGTTTCTTTGACCTGTTCAGCTACAGTGAGGAGGAGGGTGGCTGGCTCTGTTTCATGTGCAGTAACCCTGAAAAAGCAACAGTTGTTAACCAGGATGGCCAGCCACTCATTGAAGGGAAGCTGAAGGAGAAACAAGTGCGCTGGAAGTTCATTAAAAGGTGGAAAACACGTTATTTTACCCTTGCAGGCAACCAGCTTCTCTTCCGAAGAGGAAAATCAAAAGACGAACTGGACAACAGCACAATTGAACTTAGCAAAGTGCAAAGCGTTAAGGTGGTTGCGAAGAAGAGGCGTGATCGTGGGCTGCCCAGAGCCTTCGAGATCTTCACCGACAGCAAAACCTATGTGCTGAAAGCTCAAGACGAGAAGCATGCGGAAGAGTGGCTGCAGTGCATTAATGTAGCTGTGGCCCAGGCCAAAGAACGTGAGAACCGCGAGGCCACAACATACCTGTGATCCTTGTTTTGATGAGGATCTCGTGGGCCAGATGGGTGTGTCTTATTGCCACATTTTTTCCATGGTGACATTTTACTAACATTAGAGACAAAAGTCACGTCTCAATGCCACCTTCAACCTTTGCAGTCATCCTCCACATAAATTCCTGCAATGGCAAGCCACAAAGACTGTCAGTTGGTCCTTTGTTACGGTGAGCTTGGCAAAGGGCATCAAGGGCACATCGTGGCCAAAAAGGATCCCTCAGGAGAATCTTTATGAATCATGAAATGATCAGTGGGACATCCTACAGTCTTATGGACTACTCAGACGCGTGTTAGGAAAGAGCACAAGACCACAAGTCAAAATCAAGTGCGTCATTTGGGACATGACCAAAGAAAAAGAGTGACGTACAATGAGGCTGAGCTGTGTGCCTGTTTTAAACTTTGCACTGATGCTCGTTCTATGGGTCATAtctcagcatttttaaaacaccgATCATGATTTAATTCATCTTTGTCATCCAGAGAAGTATAGAAGACTTCTTTAGAATCAGCAATCACATACATTCAGAGCTGTCACAGTTAACACGTTAACGCATACGTTACATTTTAACACCACTGCCTCGTTTATTTAGTTTGATGCTATATTCTTTAGTTGCTGTCTCATCGTGTTTCATGATTTCTCTTTTTGGTATTTGTGTGAGATGagtaacattttacaacataaGCAGAATCCGCATAAATTCATGAACCTAGTAATTAAATAGTCTGATTTTATTTCCTTGATAAGTAACTGAATGCCATAGCTTGTTAACTAGAACCATTATAGGGTTAATCCAGGAGTTCCCAAACTTTTTTGGTCAGCCACACCGCTTAGATTTAATATTTCTTCTATTTACTTGAACTACATTCTGAGATTtgaagttaatattttaataatttaatgaaatatttacatgttcaCGCTTCTCTAATGTTGATactaatcataataaaaaagtatacaattattagtagtatgtttaaatttttttaaaatagaaatgcatgtggttatacagtacacacttgtttaaaatataaatattattatatattactttttattataaatatttgatcataaaaaagccaatttattttaatttgatcaattttcattattttcttttttttatcaacccACGAGCCCCTTGCAGTACTCCTGTTTGGGAAACCCTGGTTTAATCAATTGACAGCCCTCCTCTACATGGCATAAAGTAAGCTCTGAAGTTTTCATAATCTTGAATTCTACTGCCAGCTCCTCTGCGCTCCCAGAATACAGCAAGAGCCAATGTTATCTCGACAGCAATAATATTATACTACATTTAGCACTCAACTCACAAACCATGCTAACTGTTACAACATACAGCAATAAAAGGAATTAAGCTGGATCGATTTCAGAAAAAGGACCAAAAGCATTAAGAAGTGCCTCTAATAATCATTGCATGAAAGATACAAATCTATTAATGTAGTGGCAAAACAGATTTTGGTACACGCTGTTCTTTGGCCACAGAAACTTGCGTGTCAGAAATGTTGATCAATGTCTTCTTGAATAACATAGAGGACCTCTCCAAAGTTCTAGGGAACCGCAGAACAATGGCGGTGAAAGAAATTCGTTCCACTGGTATCTGTTTCAGGACTGTTTCGTGCTTTGGGGTGGGCTTTCGTGTCTCAAGGCAAACCTTGTCcctatttctcaatatttatccATGGATGAATACCAGTTGTGTTGTACAGTAACAGTGACTCAAATGTGACTGAAGCCTTTTATCTATTTATAGTACTAATAATTTTGTCATGCAAAGACACACTAGGCCTCCTACAATATTTTTTGCCCTGCGACAAAAAGTAACTGATTGCATGTAATATGCATTATGGaatcagattccaaaaattAAGTATATTACCTTATAAAGTGCTCATAATcagattacagttactttttatggattacatagttacatattattcacacaGTGGTAgtacattatgcataatttaacgAGTCTCTCTAACCTATCTTTTAAATTTTCCTTTGTATAAATCCTACTAGAAATCATCAGCTTTGACTATAttcacaaagacagacagaaaataatattaaagattaataaaaagtcATCTAAAAAGTAGAGAATGCATTACCTAAAGTAGATTGCATTCAAGTAGATCTAGATTGCATTACtaaatacagttttcatttttgtaagtAATCTACCTAGATCTGTTGACAAATGGGTTTGGTTCCAATATGTTTAGATTCAGAAAGAACAGTGAAAATGTATTCcaaaaaattctttatttttttatctgcttaagtgttaaaatattttatgcgatttcagttttttaaagatCATCGTGCATCTAAtcgtgattttaaaaaatgctgtggggaaatttactaataattaatattgcGCAGTTTATTTACAAGCATTGTTTTGTTGCCTGGTTCATTGAAGGAAATAAGCAATGACTCAAACGTACCCACAAAATTCGTCCTGAACACAGTGTGCATGGCACAGTTCCCCACAGTGCACTTTGATTCTTACTGCCACGTTatgactaaactaaaataaagctaatttaGAGAGGTTtgtgtaacatttaatatttcagcataATTAGCTTTTGGTTAAACTAGATAAAAGGTTTGTGAATAGATAAAATATCATGCACCAGGGCCATGCATTGTGAAATAgttttcatgcatttgtttttgggggggaaaaaaaactgctttaaactgAAAGTAGCTCAAACTGGTAGCTGTATGTCACTAGATGATGAAGAGATCAGTGGTGAGATCTCTGGTCAGATGAGAATTTTTGTAGTGCTGGAAGTAGCTATTTTTGTccttaaactttttaaaaaagatgcgGAAAGTCAATAATCTAGttagaaaaaaagctaaaagtgGCATTGACTTCTCGGCTGGTCCTCCATTGTCATTTCTCCTCTTTATATCTCCTTATATAGTTCCTTCGTGAGACTCTATAGACAAATGTGGCACACAGGTGTCTCTCATTATCACTCATGCCACTGGCCTCGCTCCGTTCCCACGACTCTCGGCCCTGCCCTGTTTGCCAAAATGATATCATACACAGGGGTCTGCCTGAGGTATTCGTCTTTTAATGCTTTCTCTATGATAAATTGGCTGCTTTCGTTCTTCGCTTGAGTGGTTTTTGGATGACTCCGTTCAAAATGAGGATATTTATTGAGGTAAGAATCGAATCAATTAATGATTGGATTCGTGACACAAAACATTTGGCATcttgaagcacctttatttttaaaagtatctcTTAACCCAGGGTTAAATGTGGCATTAACCCAGggctaaaaaaaagttgaaatggcacgaaAAGCTCTGTTGTATTTGAAAACAGAAGTATGTCCGCAGATGTTTCTTGTTTTGCTTCACAGTGTTGATTTCCTCTGTTTATTTACTTCAGTTGACAACATAATCCAGTCAGGATGCACGTCAGCATCTTGTAGCATTTGTTCAGATCTCACACCCCTAATGGCCCGTGACAGATGGGTTTTCAGCTCAGCAAGGTGTCTCAAGGTCCCAGGATGGGGGAAGACCCCCAAAACACGTTTGCATTTCCATGGTTTGTACGTCATTTACCGACTATCAGCATTCTCACAGTCATCATGTTGGGGTCTCTGAGccaaaattctatttattttgaaagtgttttgttttctgtttttagttcATCTGATTTGAAATGCACTTCCAGGCAGCTGTATAAATATCTGTCCAATTACTTGCTAAATGAAGGTGTACACATGGGTGCATGACCTCTGTGACATGAGCATGGCGTATGTTTGTGTTGTTTCTCCTTAGGGACGAATGTCTATTTTCTCTGTATTGAACGCTGGAGGGTTTTGCCGTCTTCAAATGAAGTTACTGAACTGTTTTTTGATACTGGAATGTACAGTGAAGGAACTACTGACTGTGAGAGGTAATTTTTCAAAGACATTCAgtgttaatataaaattttatatatatatagaagtatTAGTCAACATGAAATTGACCCTATTTACTTTCCTAAGATGTTTTCTTGGTCTTGTTGTAAAAGATTCATCTGATTATGTTATTCCAAAgaattttgatatataattatCCATGTGAGATCGTGGATTATGCGAGTAGCCAAATCTGTTTAGCATTGTTTtagcaaacacatttttttattctgaattcATTCTGGTAGGGTACACCGTGTGTCCTGGTCATGATTCTCATTAGGTAAAATGAAATCTGCTCcgtatttttttcttgcaaatatGGTTGCAAACAGCAATTCATGTTGACATTATGaacatttgtaataattgtGAACACGAAAAGCACACTGgataaaatatttgttagttattttattttaattcagttttttttttttttatctgtatttattttaagtgttttcaaCTAAACgctgaaatattacagtaattttttGAAGATTGACGTTAGTAGAAATTTTCCAaagcttaaatattttctttagatGAACAGTTCCACTAAATCTACCCATTATtgactaatataataatatttgtttttatttgtttcaataaataaatcattagaaTTATTATGGCGGCATCTACTTTTATTACTTCGAATCACAGacatttaaaaggatagttcacacaaaaatggaaattctgccAAAGATTTGTCACGCCAGTAAtcgccctcatgtcattccaaacctgtaagaccttcattcatctacagagcacaaattaagatattttggttgaaattcgagagctttctgactctCCAAAGAAAACACTGTAACTAAAATGCTCCCAGACCCAGAAACGTAATAAGGACATCAACTGGTCCATGTGACACCAGGAGTTCAACCgaatgaagctatgagaatacctTTTGTGCACaacgaaaataaaaataatgactttattt

Function

GO:

id name namespace
GO:0042471 ear morphogenesis biological_process
GO:0007420 brain development biological_process
GO:0005886 plasma membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185293 lncRNA upstream 92985 10936365 ~ 11044066 (+) True G125480
TU185295 lncRNA upstream 216718 10898164 ~ 10920333 (+) False G125481
TU185294 lncRNA upstream 231489 10898164 ~ 10905562 (+) True G125481
XR_006253185.1 lncRNA upstream 287362 10845452 ~ 10849689 (+) True LOC122363043
TU185276 lncRNA upstream 350028 10785905 ~ 10787023 (+) True G125470
TU185365 lncRNA downstream 27753 11234349 ~ 11237141 (+) True selenot1b
TU185379 lncRNA downstream 92407 11299003 ~ 11299260 (+) True G125540
XR_006253135.1 lncRNA downstream 100951 11307547 ~ 11309510 (+) False LOC122362586
XR_006253134.1 lncRNA downstream 101062 11307658 ~ 11309510 (+) True LOC122362586
TU185388 lncRNA downstream 136999 11343595 ~ 11344675 (+) False trpc6b
XM_043264401.1 mRNA upstream 2410 11098354 ~ 11134641 (+) False trip12
XM_043263958.1 mRNA downstream 11942 11218538 ~ 11224508 (+) True ankrd67
XM_043263959.1 mRNA downstream 13657 11220253 ~ 11224508 (+) False ankrd67
XM_043264631.1 mRNA downstream 19517 11226113 ~ 11230566 (+) False ccnl1a
XM_043264632.1 mRNA downstream 19519 11226115 ~ 11231633 (+) False ccnl1a
XM_043264630.1 mRNA downstream 19526 11226122 ~ 11232018 (+) False ccnl1a
TU185314 other upstream 167284 10968085 ~ 10969767 (+) True G125496
TU185257 other upstream 299775 10824974 ~ 10837276 (+) False G125461
TU185261 other upstream 299775 10824974 ~ 10837276 (+) True G125461
TU184804 other upstream 1771563 9359436 ~ 9365488 (+) True G125192
TU184604 other upstream 2600103 8176353 ~ 8536948 (+) True G125041
XR_006253172.1 other downstream 19519 11226115 ~ 11231714 (+) False ccnl1a
XR_006246968.1 other downstream 27735 11234331 ~ 11237147 (+) False selenot1b
TU185364 other downstream 27753 11234349 ~ 11237141 (+) False selenot1b
TU185801 other downstream 1602854 12809450 ~ 12822781 (+) True G125830
TU185810 other downstream 1673992 12880588 ~ 12884612 (+) True G125836

Expression Profile