RNA id: XM_043265035.1


Basic Information

Item Value
RNA id XM_043265035.1
length 2535
RNA type mRNA
GC content 0.40
exon number 7
gene id LOC122363106
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 5314922 ~ 5318185 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGAGTTCAATCTTTGGGatgcttctctttttttacaCAATCCTGCTTTTACATCAGCTTCATACAAAGGCAGGAAACACACTATGCCGAATGATGGGAGACCCTAAGTACCCGCTGATTTCTAAGAATGGAGACCTAACCATTGGAGCACTTTTTCCAGTCCATAGCACAGAGACAGTACCTTCATTcgaatttagaaaaaaacctCAGCCTCTTTCATGCTCCAGtGTGAATCTAAGAGATTTTCGCCTTGCccaaattatgatttttgccatTGAAGAGATTAACAGAAGTGAACATTTGCTCCCAAATGTTTCTATTGGTTATCGAATTTTTGACACCTGTGGTTCAAGACTATCTACCATGAGTGCAATAATGGGACTGATGAATGTTCAGGAGTTTGAAGAAGAAGACAGTTGTACTGGGCAGTCTCCATTGCATGCTATAATAGGTGATTCAGAGTCTACTGCCACAGTGATTCTCTCCAGAACTACAGGACCTTTTAAGATACCGGTGataagTCATTCAGCTTCATGTGAATGCCTCGGCAATAGAAAAGATTACCCTTCATTCTTTAGGACTACAGCTAGTGATTACCACCAGAGCAGAGCACTTGCATACTTGGTCAAGGATTTAGGATGGTCTTGGGTTGGAGCTGTGAACAGTGACAATGAATATGGAAACTATGGAATGgcaatatttcagaaaatagcCCGGGAGGAGGGGATCTGCGTGGAGTACACAGTCAAATTCTATCGAACAGAAACTGAAAAATTACAGAAAGTGgtagaaagaattaaaaaaagcactgcAAAAGTGGttattgcatttgtttcatttcttgaGATGGGTTTACTCATTGATCAGCTaagtattcaaaatattacaggCATTCAAATGATTGGAGTAAAGTCATGGATAACATCAGAAAATTACATCACTCTAAACAGCTTTCATGTTCTAGGAGGGTCGCTGGGGTTTGCAATGAGAAAAATCAATATTGAAGGGTTTTCAGATTATGTTACAAAATCATTCTGGAAAACTGCCATCCCGTGCCTACACTTTGAGGGGAATTCTTCTCAATATGCAATAAGTTGCAGAAAATATGATGATCTACTTacaatgaaaaattacaatgaagATGTGACTGAACACAGATATTCAGCCAATGTCTATGAAGCAGTTTATGCTGTGGCTCATTCACTACACAGTCTTCTCAACTGCAAAGCACAAGAAGGTTGTGAAAAAGGCCTGACAATACAGCCACAGCagGTGGTCGAGGCtctgaaaaaagtaaatttcACCGTTAAGTTTGGTGATCGTGTGTGGTTTGACAGCAGTGGTGCAACAGTGGCCCAATATGAAGTTGTAAACTGGCAGCAGAACTCAGATGGATCATTCCAGTTTAGGCCGGTGGGATACTATGATGCCTCTTTGCCACCTGATCAACGTTTTGTgctcaaaactgaaaacataatcTGGGCTGGAGGAAAATTGCAAAAGCCAAGGTCTGTGTGCAGTGAGAGCTGTCCTCCAGGCACTAGGAAGGCTACACAGAAAGGAAGACCTGTCTGCTGTTATGACTGTATTCCATgtgcagaaggagaaatcagtaaTGAGACAGATTCAATTAACTGCAAGCAGTGTCCAGGGGAATTCTGGTCTAatgctgagaaaaataaatgtgtgctaaAGGCTGTAGAGTTTCTGTCATTCACAGAAGTTATGGGTATAGTGCtaatatttttctcattatttggaGTAGGATTAACTGTGCTAGTGGCCTTTCTGTTTTACAGTAAGAAAGACACCCTAGTAAAAGCCAACAACTCAGAGCTGAGCTTCCTGCTGCTCTTCTCACTgactctgtgttttctctgttctcttacTTTCATTGGTCGGCCCACTGAGTGGTCCTGTATGTTGCGTCACACAGCATTTGGGATCACTTTTGTTCTCTGTATCTCCTGTGTTTTGGGGAAAACAATAGTGGTCTTAATGGCCTTCAAGGCTACACTTCCAGGAAGTAAtgtcatgaaatggtttggTCCTGCACAACAACGGCTCAGTGTTTTTGCCTTTACACTAATACAAATTCTTATATGTGTGCTTTGGTTGACAATATCTCCTCCATTTCCTAacgaaaatatgaaatattataaggAAAAGATCATACTTGAGTGCAGTCTAGGTTCAACTATAGGTTTCTGGGCTGTGCTGGGTTATATTGGCCTTTTGGCTGTCTTGTGCTTTTTTCTGGCTTTTCTGGCTCGCACACTGCCTGATAACTTCAATGAAGCCAAATTTATAACATTCAGCATGATAATATTTTGTGCTGTATGGATTACGTTTATTCCAGCTTATGTCAGTTCTCCTGGCAAATTTACCGTAGCTGTAGagatttttgctattttagcCTCAAGCATTGGTTTactattttgcatatttgcgcctaaatgttatattatcCTGTGTAAGCCTGAACAAAATACAAAGCAACATGTTATGGGAAAAACACCATCTAAAACCTATTGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183973 lncRNA upstream 131385 5011405 ~ 5183537 (+) True G124544
TU183978 lncRNA upstream 257084 5056750 ~ 5057838 (+) True G124547
TU183959 lncRNA upstream 406753 4903768 ~ 4908169 (+) True G124533
TU183923 lncRNA upstream 558303 4756230 ~ 4756619 (+) True G124506
TU183922 lncRNA upstream 559736 4754738 ~ 4755186 (+) True G124505
TU184034 lncRNA downstream 36528 5354713 ~ 5354980 (+) True G124595
TU184042 lncRNA downstream 174151 5492336 ~ 5494133 (+) False LOC122363125
TU184043 lncRNA downstream 177004 5495189 ~ 5495644 (+) False LOC122363125
TU184052 lncRNA downstream 305721 5623906 ~ 5624977 (+) False LOC122323196
TU184061 lncRNA downstream 341721 5659906 ~ 5660233 (+) True G124622
XM_043216538.1 mRNA upstream 519086 4759628 ~ 4795836 (+) True LOC122322928
XM_043216673.1 mRNA upstream 571012 4740143 ~ 4743910 (+) True rpl4
XM_043216670.1 mRNA upstream 579455 4726450 ~ 4735467 (+) True lctlb
XM_043216674.1 mRNA upstream 589310 4723039 ~ 4725612 (+) True snapc5
XM_043264727.1 mRNA upstream 726220 4585189 ~ 4588702 (+) True aagab
XM_043216554.1 mRNA downstream 13018 5331203 ~ 5332855 (+) True LOC122322945
XM_043216555.1 mRNA downstream 28979 5347164 ~ 5350497 (+) True LOC122322946
XM_043216556.1 mRNA downstream 51900 5370085 ~ 5381964 (+) True LOC122322947
XM_043216536.1 mRNA downstream 66910 5385095 ~ 5389352 (+) True LOC122322926
XM_043216550.1 mRNA downstream 88153 5406338 ~ 5409528 (+) True LOC122322940
TU184019 other upstream 84976 5228563 ~ 5229946 (+) True G124580
TU184016 other upstream 88865 5225808 ~ 5226057 (+) True G124577
TU183987 other upstream 174251 5139490 ~ 5140671 (+) True G124553
TU183981 other upstream 204289 5071645 ~ 5110633 (+) True G124548
TU183924 other upstream 521671 4759637 ~ 4793251 (+) False LOC122322928
TU184037 other downstream 76710 5394895 ~ 5395312 (+) True G124598
TU184051 other downstream 305268 5623453 ~ 5629653 (+) True G124612
TU184110 other downstream 658025 5976210 ~ 5979282 (+) True G124661
TU184178 other downstream 973306 6291491 ~ 6291925 (+) True G124707
TU184202 other downstream 1221062 6539247 ~ 6540907 (+) True G124727