RNA id: XM_043265114.1


Basic Information

Item Value
RNA id XM_043265114.1
length 2547
RNA type mRNA
GC content 0.40
exon number 6
gene id LOC122363149
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 5425666 ~ 5428964 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGAGTCACTGGTTGCATTGCTACATATGGTAATAGCCATCACAACCTTCTCCAAAGCTAACAAAACTATTTGTACTCTGCGAGGGCAGCCTGTACACCCTGAGCTATGGAAAGATGGGGATATTATAGTTGGAGGGGTTTTCTCTTTCCATAGCAGCTGGGAAATCAGGCAACTGACATATTCCATTATGCCACCTCCACTGAAGTGCATCAGtctTAATTTTAGAGACTTCCAGTACGCACAATCCATGCTCTTCGCAATAGAGGAAATTAATAACAGTTCCACTTTGCTACCTGGGGTCTCATTAGGCTACAAGGTCTACGACACCTGTGGATCAGTGGCAGTTGGGGTTCGAGCAGCTATGGCCCTTGCAAATGGGTATGAGAAAATGTCTGTTGAAGGGCCCTGCACAAAGCATGCTGAAGTGCAAGCCATTATTGGGGATACAACTTCTTCAGCTTGCATGGCGATATCAAAGGGTATTGGACCATTCAAGATTCCACTGATCAGCCACTACGCCACCTGTGAATGTCTTAGTGACAAAGTCAAATATCCCTCATTTCTTCGAACTATTGCAAGTGATCACTACCAGAGTAGAGCACTGGCAGAACTGGTTAGACACTTTGGCTGGACCTGGGTTGGAGCATTAAGAACAGATGATGATTATGGTAACAGTGGAATGGCCACTTTTACTAAGGTGGCTGAACAGATGGGTATCTGTTTGGAATATTCTCTTCCATTTTTCAGAACCTACCCTGAAGATAAAGTAATAAGGATAATTGAACAGATTAAAAGCTCTACCTCACGAGTGATTGTAGGATTTCTTGCTCATTGGGACTTGGAGGTTCTGCTGCATAAATTTGTTGAATACAATATTACTGGATACCAGTGGGTAGGAACCGAAGCCTGGATATCCGATTCGGTCATTGCCAGTCTGGATAAGCACCACATTCTTCAAGGAGCAATTGGTCTGGCTATACCCAAAACACAAGTTACAGGTCTGCaagaatttattttagatataaaacCACTCAAGTCTTCGGGAGGTGCTATTTTTACTGAGTTCTGGGAAGAACTGTTTCAATGTAAATACTTAACTAAAAGTGATTCTGTTTCCACAACTCCATGTTCTGGCAATGAGGAACTGTCTCAAGTGCAAAATTTATTTACAGACATGTCACTCATGCCCATCTTCAGCAATGTGTACAAAGGAGTGTATGCTGTTGCTCATACACTTCATGACCTTCTGGgatgcaaagaaaaatgtgtcTCAAATAAACAGCCTGATCCCTTAACAtTTCTGAAGCACCTGAGAAAGGTGCATTTCAAAACGAAAGATGGTGAGGAAGTTTACTTTGATGAAAATGGTGATCCAGTGGCAAAATATGACATTATAAACTGGCAGCCAAGTAAAAAACAACACTATGAATTTGTTACCGTTGGGCTTTATGATGCTTCTTTTCTGGGGCGAGATCGTTTAGCTGTCAATATGCCTTCAATTTTATGGGCTAATAATTCCACAAATGTACCGGTGTCTGTGTGCAGTGAGAGCTGCCCCCCTGGCACTAGGAAGGCTGTGAAGAAAGGAAAACCTATATGTTGTTATGACTGCATTCCTTGCACAGAGGGAGAGATCAGTAACACTACAGATTCTGTAACATGTCTGCGGTGCCATCAAGACTTCTGGTCAAATATGGAAAACAATGGATGTGTTAAAAAGGAAACAGAATTTTTGTCTTACGAGGAGATCATGGGGATTTTGCTCACATCTATTTCAGTTGTTGGtgcatttataacaataataattggagtcatatttttcaaatataaaaatacccCAATAGTGAAAGCCAACAACTCAGAATTGAGCTTCCTGCTTCTGTTTTCACTGATgttgtgttttctctgttctcttacTTTCATTGGTCGACCCACTGAGTGGTCCTGTATGTTGCGTCACACAGCATTTGGGATCACTTTTGTTCTCTGTATCTCCTGTGTTCTGGGAAAAACAATAGTGGTTTTAATGGCTTTCAGAGCTACACTTCCAGGAAGTAAtgtcatgaaatggtttgggcCTCCTCAACAAAGACtcagtgtttttgcatttactcTTATACAAGTGCTTATTTGTGTGCTTTGGTTAACAATATCTCCCccttttccatttaaaaatcttaagtACTTCAAAGAAAAGATAATACTAGAGTGTAATGTGGGATCAGTTGTGGGTTTCTGGGCTGTGTTAGGTTATATTGGACTGCTTGCTTTTCTATGTttctttttggcttttttgGCTCGGAAGCTCCCGGATAATTTTAATGAAGccaaatttattacatttagtatGCTCATATTTTGTGCCGTTTGGATTGCTTTCATACCAGCTTATGTTAGTTCTCCTGGAAAATTCACAGTGGCAGTGgagatatttgccattttagccTCCACATATGGAatgttattttgcatatttattccTAAATgctatatcattttattaaaaccagACAAGAACTCTAAAAAACATCTGATGGGTAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184034 lncRNA upstream 70686 5354713 ~ 5354980 (+) True G124595
TU183973 lncRNA upstream 242129 5011405 ~ 5183537 (+) True G124544
TU183978 lncRNA upstream 367828 5056750 ~ 5057838 (+) True G124547
TU183959 lncRNA upstream 517497 4903768 ~ 4908169 (+) True G124533
TU183923 lncRNA upstream 669047 4756230 ~ 4756619 (+) True G124506
TU184042 lncRNA downstream 63372 5492336 ~ 5494133 (+) False LOC122363125
TU184043 lncRNA downstream 66225 5495189 ~ 5495644 (+) False LOC122363125
TU184052 lncRNA downstream 194942 5623906 ~ 5624977 (+) False LOC122323196
TU184061 lncRNA downstream 230942 5659906 ~ 5660233 (+) True G124622
TU184121 lncRNA downstream 592277 6021241 ~ 6021636 (+) True G124672
XM_043216761.1 mRNA upstream 3950 5418484 ~ 5421716 (+) True LOC122323107
XM_043216623.1 mRNA upstream 9788 5412563 ~ 5415878 (+) True LOC122323013
XM_043216550.1 mRNA upstream 16138 5406338 ~ 5409528 (+) True LOC122322940
XM_043216536.1 mRNA upstream 36314 5385095 ~ 5389352 (+) True LOC122322926
XM_043216556.1 mRNA upstream 43702 5370085 ~ 5381964 (+) True LOC122322947
XM_043265123.1 mRNA downstream 5910 5434874 ~ 5438100 (+) True LOC122363154
XM_043265108.1 mRNA downstream 21409 5450373 ~ 5453739 (+) True LOC122363145
XM_043216489.1 mRNA downstream 28869 5457833 ~ 5461234 (+) True LOC122322890
XM_043216540.1 mRNA downstream 44269 5473233 ~ 5476553 (+) True LOC122322930
XM_043265073.1 mRNA downstream 63273 5492237 ~ 5495793 (+) True LOC122363125
TU184037 other upstream 30354 5394895 ~ 5395312 (+) True G124598
TU184019 other upstream 195720 5228563 ~ 5229946 (+) True G124580
TU184016 other upstream 199609 5225808 ~ 5226057 (+) True G124577
TU183987 other upstream 284995 5139490 ~ 5140671 (+) True G124553
TU183981 other upstream 315033 5071645 ~ 5110633 (+) True G124548
TU184051 other downstream 194489 5623453 ~ 5629653 (+) True G124612
TU184110 other downstream 547246 5976210 ~ 5979282 (+) True G124661
TU184178 other downstream 862527 6291491 ~ 6291925 (+) True G124707
TU184202 other downstream 1110283 6539247 ~ 6540907 (+) True G124727
TU184395 other downstream 1597354 7026318 ~ 7027135 (+) True G124881

Expression Profile