RNA id: XM_043265119.1


Basic Information

Item Value
RNA id XM_043265119.1
length 889
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC122363152
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 4280090 ~ 4281937 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTGGGGCTAACACGGATGACGACCGAAAGCTGCGTGATTCAAgcggtgttttatttttgtggcaaTGTTGTTGACTCAGATTAAAGTGGCATGTGTCGTCCTGTGCCTTATTGGCTTCAGGGAGCCCTGGAATACCTCAGATGTTACAGCAGTTCTGCACGGAGGACTCGCACATCAAGGTTTCATCAGATCTGAAAATGATGCTAACCTGATGTTTGAGTTCTTATGGAGTGGACTTGAGATTGATGCTGACAATAACATTGTCATGCGAGATCAAGAAATTGCATCAATGCGACAAGGGCGAGCTTTCTTATCTCTTATAAACGACAGCATCCCAAAAACTGTCTCTGCAATGGAGAATTTACTGGCTGAGCTGGAGAAGCAAGACAACTCTTTTACTCAGGCCCGTTTTGAGACCCTCCTCCTTGGGACCGTCTATTCAGCCTATCAAGCACGAAACCAGAGGCTAGAGTCCGAGCAGCAGGCCTGGAAGGACATTCTTGGTCGTTTGGCAAATGTTACTTTCGTTCAGCTACGCAGGTCTTAACTAACAATAAACACACCAGTGATTCAGAAGTGCACACGTAAAGAAAATCAGATAAAGAGTGTGCATATTTGGCGTGCTGTCCGAGGGGAGGGCTCTGAGCTTGGAATTTGGCCTGAACTCAGAGTACTCCTCCATATCCTAGGCTGGGATAGGAAAAGTCGAGAGTGAGGAGTTATGGTGGTGAAGGGATGCTGGAAACTGTTGAGGGACAGAGGTGAGTCGACTATGTATATATACTCCTCTCGTGCTGATAGGGTAGATTATCTGAACGTGTTCctcacaaattttaaataaacatcatttaaagtAACACCCTGATTATTTGTCCCTTGTTTCTATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183657 lncRNA upstream 96439 4182733 ~ 4183651 (+) True G124295
TU183656 lncRNA upstream 97699 4181385 ~ 4182391 (+) True G124294
TU183655 lncRNA upstream 98801 4180426 ~ 4181289 (+) True G124293
TU183654 lncRNA upstream 100734 4179040 ~ 4179356 (+) True G124292
TU183476 lncRNA upstream 144490 4135383 ~ 4135600 (+) True G124161
TU183831 lncRNA downstream 179908 4461845 ~ 4462124 (+) True G124427
TU183828 lncRNA downstream 194610 4476547 ~ 4477879 (+) True G124425
XR_006246939.1 lncRNA downstream 406097 4688034 ~ 4691944 (+) True LOC122323045
TU183914 lncRNA downstream 462823 4744760 ~ 4745307 (+) True G124497
TU183915 lncRNA downstream 463666 4745603 ~ 4745835 (+) True G124498
XM_043265039.1 mRNA upstream 16379 4257020 ~ 4263711 (+) True ighmbp2
XM_043265040.1 mRNA upstream 16379 4257020 ~ 4263711 (+) False ighmbp2
XM_043264762.1 mRNA upstream 26798 4246548 ~ 4253292 (+) True dennd11
XM_043264760.1 mRNA upstream 26798 4246548 ~ 4253292 (+) False dennd11
XM_043264761.1 mRNA upstream 26798 4246548 ~ 4253292 (+) False dennd11
XM_043264130.1 mRNA downstream 5510 4287447 ~ 4291028 (+) False paqr5a
XM_043264129.1 mRNA downstream 5512 4287449 ~ 4291461 (+) True paqr5a
XM_043264128.1 mRNA downstream 5512 4287449 ~ 4291461 (+) False paqr5a
XM_043216916.1 mRNA downstream 10300 4292237 ~ 4301878 (+) True kif23
XM_043216918.1 mRNA downstream 10300 4292237 ~ 4301878 (+) False kif23
XR_006253139.1 other upstream 536334 3719888 ~ 3743756 (+) False nrn1la
TU183320 other upstream 725400 3511966 ~ 3554690 (+) True tmem170a
TU183022 other upstream 1974512 2302526 ~ 2305578 (+) False plin1
TU182722 other upstream 2277800 2001786 ~ 2002290 (+) True G123664
TU182587 other upstream 2708159 1565426 ~ 1571931 (+) True G123568
XR_006246974.1 other downstream 458931 4740868 ~ 4740965 (+) True LOC122323235
XR_006246980.1 other downstream 459318 4741255 ~ 4741324 (+) True LOC122323241
XR_006246981.1 other downstream 459617 4741554 ~ 4741651 (+) True LOC122323242
XR_006246975.1 other downstream 460370 4742307 ~ 4742435 (+) True LOC122323236
TU183924 other downstream 477700 4759637 ~ 4793251 (+) False LOC122322928

Expression Profile