RNA id: XR_006246954.1


Basic Information

Item Value
RNA id XR_006246954.1
length 2211
lncRNA type inter_gene
GC content 0.45
exon number 7
gene id LOC122323141
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 13612059 ~ 13693855 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTCATTCTAAAGTATGGCGATGCAATTTGCTCGTAATAGAGACACAAATCGCAATTTCAAGACTTCCAGTTATCCTGCTTTCTAGATATTGTCCGGATTCTTGAGAGATGCATTTAGTACGCATTGCTGTCTGTGTGGATAAAAGTAACttctaaatgcatttctctCATTCTTGGTTTGTCAGAATTGAGTATTTCTACTCGGCACGTACGGCCGGCCTCGGGGGAGGAACACAAGATGGATCGGCTTCTCCTGAGGGTGTGTAAAGCCAAGGAGGAAATGCCTCCCTTTAAACAGGAAACTAGGATATTTACTGAGATTAAAATAACAACCGACGCCGAATCTGAGAGAAAACTAGTTAGTAGTTAGTAAGTCCAGTCAACAATGCGTGATTATCCTTTCTGTTTGACCTTTAATTTCcaaaccaataataataatataagtaataatagcaataaaataatatataataataataaaaagcttccCAGTAATTATTAAtcagtaaaatattgtaaattctATATTTTGCCACTAGTAAGGcttatttattagctttttagGAAATAACTGATATGTGGCCTATGCATTTGTAACAGTTTGTGTAGCACGATATCATTCATCTGATGTAATTTGTTACCCAGTTGTGCAATATTTGGCCCATCATTGCATTTCATGTAATTATATGTTAAATTAAGGCATTTGGACACTTAAGCCACAACTTGTAAATGTCTTTGCAATGCATTGGataacaaaatgtcaaaactaCTTTTcaagctaaataataaataataaaaaatgataaatatactCTGAATAAATGGTATTTAGATACACCGTTTGGAGGTGATGCACTAATTGGCTAGACTGTTTGATAGATGGCAAACAGCACCAGCGTGAGTCTGAACAACAGCTCGGTCCCGATGAGCGTGTGAGAGTCTGCGGCTTTCAGCGGCATCACAGCCTATCTATAGCGACATCAACAAGTCTCAACCCCGAGCCCCCGTCCCCCCGACCCGCTCCCCAGCGCAACGGTGTCCCATTAACACATCTGACTCCTGAAACCTGGCAGGAATGGCTCTGGTATCACACACGCGGACATTACTCCCATACTCGTGTTGGGAGGAGCTGGCTGAGGGGTATCGCTTCCACATCAAGTGTGCACCTGCAGTGTTTATCAAAACATATCAAACATCGCTGACAGAGTCACCCACGTTCTTCACAacgtcttcttttgtgttcggcagacGCGACGGTTCGGAACGGCTTTCATTGTTTCACTTTaaggtgaactatctctttaactCTCACTATATTCGGTCACATGCTGCTATCTTAACTATGGCATGTTGGGCCGTGAACTCCACACAGTACCGTGAGACTGATCTTATGACCAGAGCCGCAGCTGTTGCAACTGTGTAAGACTAATACagaaggcacacacacacacgcatgcctTCAGCATGACTGACAGCGCAAGAAAAACATTAAGATGCTCAGCTTATTCTCTGACTGACGGCTGCGGAGCGGGACATATGCAGTATTATTATGGTCTCTGTTCGGGAGGCGGTCAGCGATCTAATTGGATGAAGGCAGTGGGATGCCCCATATACAGAGGGAGGGAGAGCAGGAGCCCGTCTTACACGAATGCGACTCTGATGGCCCGACGAGGGCGACACGTGACCGCAGTGAAGTGAAGACTAACGTAAAAGAAGCTCTGGAGTCAGTTCATGATGCCAAAATATTGCGGCGAGaaacgaGGCAAAAAGGAGAGAAACCTGTACACCTATGACCACCCAAACACGGAAGTAACCAGGACACACCCGGAGTCATAAACCGTGGCGCGGGGCCAAACCTTTGCAgatacagaaacaaaacataaagCGCGATTCCTGGGTCGTCAGCGTGGGCCTGCTGATCTCAGTACGAGTGGGAGAGCAAGAAAGCAAGAGAACAAGGATCTGAACAGTTTGTTCACCCGGGTGAAGGCTAGAAGATCAAGcttGGTGTAGCAAGAGCTTGCCTGTGTTGCAATGTCCAGTCCCAGGGCTGAATTGTCCACCACAACCGCGaaaaaaaaatacttggcTCACCTACAAGTGTGCAGACCGCCTCTACCACTCCATTATACACAGAGGATGTACTGGAGGGCTCAATGTGGTCCCACATCAGCTGGATGTAGTTAAAGACCTGTCCGTATCCAGCTGTGG

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186228 lncRNA upstream 88301 13543253 ~ 13543775 (+) True G126098
TU185895 lncRNA upstream 261295 13369713 ~ 13370781 (+) True G125887
TU185894 lncRNA upstream 262565 13367416 ~ 13369511 (+) True G125886
TU185889 lncRNA upstream 280346 13350491 ~ 13351730 (+) True G125881
TU185887 lncRNA upstream 285139 13346678 ~ 13346937 (+) True G125879
TU186286 lncRNA downstream 115424 13809279 ~ 13840132 (+) True G126139
TU186293 lncRNA downstream 139789 13833644 ~ 13887497 (+) True G126143
TU186318 lncRNA downstream 168082 13861937 ~ 13866639 (+) False lbhl
TU186339 lncRNA downstream 221883 13915738 ~ 13917760 (+) True G126178
TU186344 lncRNA downstream 227991 13921846 ~ 13922131 (+) True G126183
XM_043216803.1 mRNA upstream 34862 13594302 ~ 13597214 (+) True sertad3
XM_043216805.1 mRNA upstream 37927 13591816 ~ 13594149 (+) True blvrb
XM_043216806.1 mRNA upstream 37927 13591939 ~ 13594149 (+) False blvrb
XM_043263910.1 mRNA upstream 106770 13519067 ~ 13525306 (+) True mmp23bb
XM_043264363.1 mRNA upstream 117381 13501708 ~ 13514695 (+) False ap2m1b
XM_043216801.1 mRNA downstream 1268 13695123 ~ 13704727 (+) True daw1
XM_043216856.1 mRNA downstream 168016 13861871 ~ 13869332 (+) True lbhl
XM_043216855.1 mRNA downstream 176174 13870029 ~ 13873265 (+) True LOC122323172
XM_043264016.1 mRNA downstream 429541 14123396 ~ 14126844 (+) True rbm7
XM_043263900.1 mRNA downstream 436644 14130499 ~ 14147187 (+) True barx2
TU185911 other upstream 201311 13427097 ~ 13430765 (+) False rpl35a
XR_006253129.1 other upstream 413730 13216657 ~ 13218346 (+) False LOC122362547
XR_006253128.1 other upstream 413739 13216484 ~ 13218337 (+) False LOC122362547
XR_006246961.1 other upstream 676131 12946841 ~ 12955945 (+) False glb1l2
XR_006246942.1 other upstream 706608 12917226 ~ 12925468 (+) False napab
TU186336 other downstream 215709 13909564 ~ 13912800 (+) True G126175
TU186297 other downstream 246240 13940095 ~ 13941369 (+) True G126146
TU186575 other downstream 1133026 14826881 ~ 14828292 (+) True gemin7
TU186588 other downstream 1213412 14907267 ~ 14908483 (+) False LOC122322993
TU186589 other downstream 1215343 14909198 ~ 14909676 (+) False LOC122322993

Expression Profile