RNA id: XR_006246958.1


Basic Information

Item Value
RNA id XR_006246958.1
length 588
lncRNA type inter_gene
GC content 0.49
exon number 5
gene id LOC122323166
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 19487570 ~ 19568485 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATTCAGGCGACGGTGTCAATGCCAATACACTTCCGGTGTTTCTTCTCAACAGCGACAGGCACTCAAATGACTCCTGCCATTGGGTTGTCCTCCCTTTACAAGCCTCGACAGAGCCCACCAGAAGGACAGACGGACGGACGGGCACATAATCATGATCTGATTTTTGCAAGACAAGGTTGGCACCTTGGTGATGCGTAGGACAACCGGTATGGCGCAGTAATTGGCTGCTCGTCGTGACATCGACTCGGCTGCTACCCGCGGAGAGAGCCAAAACACCCACACGATTTCTCCAATCAAACACGGAGCACGCTGGAGATCGGCTGAGGATTATTTCATTAAAGCCGTAATCCCCTCCGAAGCGTCTAGGAGacATGAATGACAGAGGAGTGTCAAACCAATTGGCAAGAACATCATCGAGCTTTAAATGGGCTCTTCTGACTTGGACCGtcatggATTTTCTAGAAGCTGTCAAGAACGTGATGTGCAGACTGATACCTACTGCATCAGATTGACTCGAACGAGTTCAGACCTGATAAAGAATCCAACTAAATGCAGAAGCTTCGGCGAAGACTTCTTTTCAGAGGTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006246957.1 lncRNA upstream 7349 19452530 ~ 19480221 (+) True LOC122323165
XR_006253152.1 lncRNA upstream 139091 19330322 ~ 19348479 (+) True LOC122362700
TU188406 lncRNA upstream 199024 19269663 ~ 19288546 (+) False LOC122323181
TU188269 lncRNA upstream 705866 18730690 ~ 18781704 (+) False G127500
TU188255 lncRNA upstream 794339 18690565 ~ 18693231 (+) True G127492
TU188450 lncRNA downstream 7404 19575889 ~ 19576159 (+) True G127617
TU188463 lncRNA downstream 54528 19623013 ~ 19623282 (+) True G127630
TU188465 lncRNA downstream 57668 19626153 ~ 19626521 (+) True G127632
TU188470 lncRNA downstream 213280 19781765 ~ 19924802 (+) True G127637
TU188509 lncRNA downstream 417256 19985741 ~ 19991636 (+) True G127663
XM_043216816.1 mRNA upstream 36359 19404321 ~ 19451211 (+) True LOC122323148
XM_043216913.1 mRNA upstream 98907 19380035 ~ 19388663 (+) False slitrk3a
XM_043216914.1 mRNA upstream 98907 19382549 ~ 19388663 (+) True slitrk3a
XM_043216915.1 mRNA upstream 98907 19382938 ~ 19388663 (+) False slitrk3a
XM_043216867.1 mRNA upstream 199014 19275350 ~ 19288556 (+) False LOC122323181
XM_043264320.1 mRNA downstream 31527 19600012 ~ 19603818 (+) True LOC122362761
XM_043264321.1 mRNA downstream 55727 19624212 ~ 19625612 (+) True LOC122362762
XM_043216837.1 mRNA downstream 316649 19885134 ~ 19901478 (+) True serpini1
XM_043216839.1 mRNA downstream 334661 19903146 ~ 19908222 (+) True LOC122323160
XM_043216825.1 mRNA downstream 359741 19928226 ~ 19935759 (+) True LOC122323153
TU188266 other upstream 646035 18777768 ~ 18841535 (+) False G127500
TU188268 other upstream 705411 18777768 ~ 18782159 (+) True G127500
TU188207 other upstream 925960 18560366 ~ 18561610 (+) False G127456
TU188208 other upstream 925960 18560366 ~ 18561610 (+) False G127456
TU187968 other upstream 1347317 18138535 ~ 18140253 (+) True G127292
XR_006246956.1 other downstream 434519 20003004 ~ 20013786 (+) False wdr59
TU188630 other downstream 518210 20086695 ~ 20087581 (+) False zfhx3a
TU188799 other downstream 979342 20547827 ~ 20549318 (+) False glipr1b
XR_006246928.1 other downstream 982663 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU189467 other downstream 2832489 22400974 ~ 22406982 (+) True LOC122363143

Expression Profile