RNA id: XR_006253167.1


Basic Information

Item Value
RNA id XR_006253167.1
length 1999
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id LOC122362840
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 20869875 ~ 20887115 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACAGCAGAAAAGTACAgtgagggaggaagaggaggacaaGAGTGAGATGATGATGGAAAAGTGTAGCTTTTGGAAATAATCAAATCTACAATGGGACCATTATTGGCTTAGGGTGCATCCTTTCTGAAGCATTGTTTGTGTAAGATGGACACAAACCTGGGGTCAACGCACATGCCATGTGGCGAATGTTTGAGCATCTACCCAGCCAAACAGACAGAAGTCTCGTCTCCGAACACAAGCAGCAGCAGGACAGAGTTTGgccttctctgtctctcactctgcCCTGCAGGCTACAACACAGACACACGGAGCAAGAatgaggacagagagagagagagagagagaagacaaacAGAGTGAAATGAGATTTAATGGAAGTGCATAATAtctacagagacagagagagagacagatgaaggAAAGAGAGAACAACCAATCAATGGCAAAGTGGTActtgaaggattttttttttcctagaaaGAGAGACAATATTggtaaaaaggaaaatgagatGGAAAGACCAAGGCCATTTTTGTCAGAtgacattatatacacacatttttttaatcatataaatattattaaataaataaatattgttattaaagcaagtaattacataaattaatcataataaatgattttttaaattattttttatttatcaatgttgtaaaaaaaaccaaTGTAAAATAGTAACAAagacaattattaatattagttgttattattattaatatataatacaacaaaatacTACTACTGCAAATAATAATCCACAAGGAAATGTGGTGCATAAACTGTCCGTAAGCTCCTGGAAAATGTGGCTTGGGACGAGACAAAGTCTTTGCACATCTCTGCAGCTGCTCTCCTGTTTTGTTCATTCACCTCTATTTTTATCAACAAAATCTTTTTCTTCTCATCGCTGTATCTGCATTACTTCCACCTCTGTTCCCAAACCTGCTCGAGAAATCGAGGGAGAGAGATGTTGCACAGAGCACTCAGCAGTTGAATCGATTCCGGCCTGATCTTTTTAGGTTATACATGTTTTGTGTGTTGCCTCATTATTTAACCAAAGCAGACCGGAGGCCAGCGATGATTCCAGCAGCAGTGCCCGGAGCAGCCTCATTTTCATCCATTCATACGACACGCTCATAACAGCGCTAGGAGAGGAGGCCTGCTGAAAACGCCTGCTGAACGGACTCGGAGATCAATAAACAACACTAGAGATGCTCTATGGCTTTATACTGTTGAATCTCAGATAAAAGAGAGATCTGAAGATGATGAGACCCGCGCTCAATATGCTTGAAGAAATAACTAAGTAAACTGATTGGTTTGGGAAGAGTTTGTTTTTCGCTCTTGTATAAGGACTGAGGAAGTCGGATTCGATTTACACCAAACGTGTAACATTTataagtaatattatttattctttgcaGTTTTTAGTGAAGATATTTGAGTGATATTTCTAATTATAATCGATACTTCTTCAGTTCCCTGTCGTGTCTTCACACTGAAGCTAATTGTGCTCCAAATGTTATGACATCTGGAATTGGGTGCGCTAGATCTTATTAAGGTTTGAAAAATTGCAAAGATTGCAAAAGGGGGTTGTCATAGCGATgtcacagagaaagagaaaatttttttaacattcttaaagggaaatttacaaaatacaaatgaagaacatttatttttaagaatgtatattaaaatcataacaaaatattataattgcatacatattatatatagagagagaattAAAGTTATTGTAATGCCAGAATGCAATactcttaaatgtaaaaaaggaaGAATCTGCTGACATCAGGAAGCAGAAGACATCAAAATTtgagaaatacttttttttgtaactaaaCCTTATATTTTTCTGACAGTTAGCTACAAGGCAATGAAGAAAGTTATTATTATGTACTAATCCAGCAACAAAGAATGTGTTCACATACAATATATAGTACGAAATCACCTGTTACTTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188847 lncRNA upstream 222167 20641806 ~ 20647708 (+) False LOC122363025
XR_006253183.1 lncRNA upstream 222236 20641765 ~ 20647639 (+) True LOC122363025
TU188846 lncRNA upstream 225590 20641806 ~ 20644285 (+) False LOC122363025
TU188764 lncRNA upstream 228816 20640016 ~ 20641059 (+) False LOC122362661
TU188827 lncRNA upstream 269356 20597207 ~ 20600519 (+) False terb1
TU188900 lncRNA downstream 7662 20894777 ~ 20937442 (+) True G127935
TU189179 lncRNA downstream 193654 21080769 ~ 21081291 (+) True G128148
TU189180 lncRNA downstream 241438 21128553 ~ 21129033 (+) True G128149
TU189192 lncRNA downstream 274771 21161886 ~ 21162751 (+) True G128157
TU189193 lncRNA downstream 278157 21165272 ~ 21166073 (+) True G128158
XM_043263952.1 mRNA upstream 198038 20666753 ~ 20671837 (+) False rabl2
XM_043263951.1 mRNA upstream 198038 20667334 ~ 20671837 (+) True rabl2
XM_043263953.1 mRNA upstream 198038 20667344 ~ 20671837 (+) False rabl2
XM_043265111.1 mRNA upstream 212052 20654532 ~ 20657823 (+) True odf3b
XM_043265109.1 mRNA upstream 212052 20654532 ~ 20657823 (+) False odf3b
XM_043264880.1 mRNA downstream 41400 20928515 ~ 20933433 (+) True arsa
XM_043265030.1 mRNA downstream 76013 20963128 ~ 20969701 (+) True chkb
XM_043264247.1 mRNA downstream 82977 20970092 ~ 20972842 (+) True LOC122362691
XM_043264248.1 mRNA downstream 82977 20970092 ~ 20972842 (+) False LOC122362691
XM_043265138.1 mRNA downstream 86400 20973515 ~ 20980699 (+) True cpt1b
XR_006246928.1 other upstream 313248 20551148 ~ 20556627 (+) False si:dkey-30c15.17
TU188799 other upstream 320557 20547827 ~ 20549318 (+) False glipr1b
TU188630 other upstream 782294 20086695 ~ 20087581 (+) False zfhx3a
XR_006246956.1 other upstream 856089 20003004 ~ 20013786 (+) False wdr59
TU188268 other upstream 2087716 18777768 ~ 18782159 (+) True G127500
TU189467 other downstream 1513859 22400974 ~ 22406982 (+) True LOC122363143
TU189495 other downstream 1547691 22434806 ~ 22438679 (+) True G128367
TU189951 other downstream 2569985 23457100 ~ 23579802 (+) False cdh13
TU189952 other downstream 2837521 23724636 ~ 23736846 (+) False cdh13
TU190171 other downstream 3562650 24449765 ~ 24457560 (+) True G128858

Expression Profile